New package, dependency for sci-biology/bioperl

(Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64)

4 files changed, 95 insertions, 0 deletions

diff --git a/sci-biology/bioperl-db/ChangeLog b/sci-biology/bioperl-db/ChangeLog
new file mode 100644
index 000000000000..2d9a6dbf8a16
--- /dev/null
+++ b/sci-biology/bioperl-db/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-biology/bioperl-db
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/ChangeLog,v 1.1 2009/03/16 23:24:35 weaver Exp $
+
+*bioperl-db-9999 (16 Mar 2009)
+*bioperl-db-1.6.0 (16 Mar 2009)
+
+  16 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml,
+  +bioperl-db-1.6.0.ebuild, +bioperl-db-9999.ebuild:
+  New package, dependency for sci-biology/bioperl. Ebuild written by me.
+
diff --git a/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild b/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild
new file mode 100644
index 000000000000..746d6e49832c
--- /dev/null
+++ b/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-1.6.0.ebuild,v 1.1 2009/03/16 23:24:35 weaver Exp $
+
+EAPI="2"
+
+inherit perl-module
+
+DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI="http://bioperl.org/DIST/BioPerl-db-${PV}.tar.bz2"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND="virtual/perl-Module-Build
+	>=sci-biology/bioperl-${PV}
+	dev-perl/DBI
+	sci-biology/biosql"
+
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/BioPerl-db-${PV}"
+
+src_configure() {
+	# This disables tests. TODO: Enable tests
+	sed -i -e '/biosql_conf();/d' \
+		-e '/skip.*DBHarness.biosql.conf/d' "${S}/Build.PL" || die
+	perl-module_src_configure
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}
diff --git a/sci-biology/bioperl-db/bioperl-db-9999.ebuild b/sci-biology/bioperl-db/bioperl-db-9999.ebuild
new file mode 100644
index 000000000000..fb81ff390943
--- /dev/null
+++ b/sci-biology/bioperl-db/bioperl-db-9999.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-db/bioperl-db-9999.ebuild,v 1.1 2009/03/16 23:24:35 weaver Exp $
+
+EAPI="2"
+
+inherit perl-module subversion
+
+DESCRIPTION="Perl tools for bioinformatics - Perl API that accesses the BioSQL schema"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI=""
+ESVN_REPO_URI="svn://code.open-bio.org/bioperl/${PN}/trunk"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="virtual/perl-Module-Build
+	>=sci-biology/bioperl-${PV}
+	dev-perl/DBI
+	sci-biology/biosql"
+
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/BioPerl-db-${PV}"
+
+src_configure() {
+	# This disables tests. TODO: Enable tests
+	sed -i -e '/biosql_conf();/d' \
+		-e '/skip.*DBHarness.biosql.conf/d' "${S}/Build.PL" || die
+	perl-module_src_configure
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}
diff --git a/sci-biology/bioperl-db/metadata.xml b/sci-biology/bioperl-db/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/bioperl-db/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>