New upstream version

(Portage version: 2.1.1)

3 files changed, 56 insertions, 1 deletions

diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog
index 7d246d19d838..e37d947166a1 100644
--- a/sci-biology/vienna-rna/ChangeLog
+++ b/sci-biology/vienna-rna/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/vienna-rna
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.8 2006/02/03 04:50:55 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.9 2006/09/14 00:13:46 ribosome Exp $
+
+*vienna-rna-1.6.1 (14 Sep 2006)
+
+  14 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+  +vienna-rna-1.6.1.ebuild:
+  New upstream version.
 
 *vienna-rna-1.6 (03 Feb 2006)
 
diff --git a/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1 b/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1
new file mode 100644
index 000000000000..2288cb24658a
--- /dev/null
+++ b/sci-biology/vienna-rna/files/digest-vienna-rna-1.6.1
@@ -0,0 +1,3 @@
+MD5 2fd6e3819c9f35d27ce74d77447880a3 ViennaRNA-1.6.1.tar.gz 1149127
+RMD160 37e4719e7ca03ced354976fa83f38d5f96776531 ViennaRNA-1.6.1.tar.gz 1149127
+SHA256 8036b6a562ec898dab4144cb5f18b42ff7c4290875572d05e7059b1ca2d5ddfd ViennaRNA-1.6.1.tar.gz 1149127
diff --git a/sci-biology/vienna-rna/vienna-rna-1.6.1.ebuild b/sci-biology/vienna-rna/vienna-rna-1.6.1.ebuild
new file mode 100644
index 000000000000..cbe25220dec3
--- /dev/null
+++ b/sci-biology/vienna-rna/vienna-rna-1.6.1.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.6.1.ebuild,v 1.1 2006/09/14 00:13:46 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison"
+LICENSE="vienna-rna"
+HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA"
+SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz"
+
+SLOT="0"
+IUSE=""
+KEYWORDS="~x86 ~ppc"
+
+DEPEND="dev-lang/perl
+	media-libs/gd"
+
+S="${WORKDIR}/ViennaRNA-${PV}"
+
+src_compile() {
+	econf --with-cluster || die "Configuration failed."
+	cd "${S}"/RNAforester/g2-0.70
+	sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/lib:" \
+		-e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \
+		-i Makefile || die "Failed patching RNAForester build system."
+	cd "${S}"
+	emake || die "Compilation failed."
+	cd "${S}"/Readseq
+	sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \
+		-i Makefile || die "Failed patching readseq Makefile."
+	make || die "Failed to compile readseq."
+	# TODO: Add (optional?) support for the NCBI toolkit.
+}
+
+src_install() {
+	make install DESTDIR="${D}" || die "Installation failed."
+	dodoc AUTHORS ChangeLog NEWS README THANKS || \
+		die "Failed to install documentation."
+	newbin Readseq/readseq readseq-vienna || die \
+		"Installing readseq failed."
+	dodoc Readseq/Readseq.help || die \
+		"Readseq Documentation installation failed."
+	newdoc Readseq/Readme README.readseq || die \
+		"Installing readseq Readme failed."
+}