sci-chemistry/reduce: Version BUmp

(Portage version: 2.2.0_alpha144/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)

3 files changed, 60 insertions, 3 deletions

diff --git a/sci-chemistry/reduce/ChangeLog b/sci-chemistry/reduce/ChangeLog
index 1e72bd06414a..e0fc80e28ce3 100644
--- a/sci-chemistry/reduce/ChangeLog
+++ b/sci-chemistry/reduce/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/reduce
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.20 2011/05/28 13:53:28 ranger Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.21 2012/12/07 11:45:08 jlec Exp $
+
+*reduce-3.16.111118 (07 Dec 2012)
+
+  07 Dec 2012; Justin Lecher <jlec@gentoo.org> +reduce-3.16.111118.ebuild,
+  metadata.xml:
+  Version BUmp
 
   28 May 2011; Brent Baude <ranger@gentoo.org> reduce-3.13.080428-r1.ebuild:
   Marking reduce-3.13.080428-r1 ppc for bug 325999
diff --git a/sci-chemistry/reduce/metadata.xml b/sci-chemistry/reduce/metadata.xml
index 9ac9ffdb3a41..e42d0af60f42 100644
--- a/sci-chemistry/reduce/metadata.xml
+++ b/sci-chemistry/reduce/metadata.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
+	<herd>sci-chemistry</herd>
 </pkgmetadata>
diff --git a/sci-chemistry/reduce/reduce-3.16.111118.ebuild b/sci-chemistry/reduce/reduce-3.16.111118.ebuild
new file mode 100644
index 000000000000..4051c28e020b
--- /dev/null
+++ b/sci-chemistry/reduce/reduce-3.16.111118.ebuild
@@ -0,0 +1,51 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/reduce-3.16.111118.ebuild,v 1.1 2012/12/07 11:45:08 jlec Exp $
+
+EAPI=4
+
+inherit eutils toolchain-funcs
+
+MY_P="${PN}.${PV}.src"
+
+DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.zip"
+
+LICENSE="richardson"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}
+	app-arch/unzip"
+
+S="${WORKDIR}/"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/3.13.080428-LDFLAGS.patch \
+		"${FILESDIR}"/3.14.080821-CFLAGS.patch
+}
+
+src_compile() {
+	DICT_DIR="/usr/share/reduce"
+	DICT_FOLD="reduce_het_dict.txt"
+	DICT_FNEW="reduce_wwPDB_het_dict.txt"
+
+	emake clean
+	emake \
+		CC="$(tc-getCC)" \
+		CXX="$(tc-getCXX)" \
+		OPT="${CXXFLAGS}" \
+		DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FNEW}" \
+		DICT_OLD="${EPREFIX}/${DICT_DIR}/${DICT_FOLD}"
+}
+
+src_install() {
+	dobin "${S}"/reduce_src/reduce
+	insinto ${DICT_DIR}
+	doins "${S}"/${DICT_FOLD} "${S}"/${DICT_FNEW}
+	dodoc README.usingReduce.txt
+}