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* sci-biology/clustal-omega: Version BumpJustin Lecher2014-01-061-5/+17
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustal-omega: Version BumpJustin Lecher2014-01-062-2/+45
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/mira: Drop oldJustin Lecher2014-01-061-4/+21
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/mira: Drop oldJustin Lecher2014-01-063-124/+6
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/seaview: Punt base.eclass; Bump EAPI to 5; add missing dep for ↵Justin Lecher2014-01-061-7/+17
| | | | | | pkg-config; Give some PREFIX love; use tc-getPKG_CONFIG instead of plain pkg-config (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/seaview: Punt base.eclass; Bump EAPI to 5; add missing dep for ↵Justin Lecher2014-01-062-14/+18
| | | | | | pkg-config; Give some PREFIX love; use tc-getPKG_CONFIG instead of plain pkg-config (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalw: Readd SLOT=1 ebuild; punt base.eclass usage; bump to ↵Justin Lecher2014-01-061-14/+17
| | | | | | EAPI=5 (Portage version: 2.2.8/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalw: Readd SLOT=1 ebuild; punt base.eclass usage; bump to ↵Justin Lecher2014-01-063-1/+77
| | | | | | EAPI=5 (Portage version: 2.2.8/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalx: Make sure only system libs are usedJustin Lecher2014-01-061-7/+18
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalx: Make sure only system libs are usedJustin Lecher2014-01-062-2/+50
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalw: Drop old and clean base.eclass usageJustin Lecher2014-01-061-14/+17
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/clustalw: Drop old and clean base.eclass usageJustin Lecher2014-01-065-110/+6
| | | | (Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Add additional patch from Martin MokrejšJustin Lecher2013-12-291-15/+17
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/biopython: Add additional patch from Martin MokrejšJustin Lecher2013-12-293-1/+91
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/amos: Fix python supportJustin Lecher2013-12-291-5/+17
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/amos: Fix python supportJustin Lecher2013-12-293-1/+69
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/velvet: Import Version BUmp from sci overlay, thanks mahn for ↵Justin Lecher2013-12-281-7/+19
| | | | | | the ebuild, #495094 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/velvet: Import Version BUmp from sci overlay, thanks mahn for ↵Justin Lecher2013-12-282-1/+79
| | | | | | the ebuild, #495094 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-201-8/+23
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/fasttree: Version BUmp, #494662Justin Lecher2013-12-204-1/+89
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Cleanup old.Manuel Rüger2013-12-151-24/+1
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Cleanup old.Manuel Rüger2013-12-153-62/+5
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-151-16/+16
| | | | (Portage version: 2.2.1/cvs/Linux x86_64, RepoMan options: --include-arches="amd64", signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #488414Agostino Sarubbo2013-12-152-3/+6
| | | | (Portage version: 2.2.1/cvs/Linux x86_64, RepoMan options: --include-arches="amd64", signed Manifest commit with key 7194459F)
* x86 stable, bug #488414Johannes Huber2013-12-071-2/+22
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key F3CFD2BD)
* x86 stable, bug #488414Johannes Huber2013-12-072-3/+6
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key F3CFD2BD)
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-061-16/+16
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Fix underlinkingJustin Lecher2013-12-063-3/+9
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-061-20/+20
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/samtools: Keyword for *-linux, tested by meJustin Lecher2013-12-066-13/+18
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2013-12-011-21/+3
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BumpJustin Lecher2013-12-012-1/+52
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-251-12/+4
| | | | | | #489712 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* NMU: Add missing dependency on libxml and ruby20 support. Fix tests see bug ↵Manuel Rüger2013-11-254-3/+79
| | | | | | #489712 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key )
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-241-10/+8
| | | | | | snapshotted version of the lastest version is in the tree (#491816). (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a ↵Johann Schmitz2013-11-243-77/+6
| | | | | | snapshotted version of the lastest version is in the tree (#491816). (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-241-6/+13
| | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* Version bump and reworked ebuild for sci-biology/picard. Uses a snapshotted ↵Johann Schmitz2013-11-244-3/+215
| | | | | | tarball from upstreams 1.103 subversion tag to meet gentoo qa requirements (wrt #491816) (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
* superseeded by sci-biology/allpathslgJustin Lecher2013-11-2011-960/+0
| | | | Upstream wants anybody to move over
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-131-23/+3
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, unsigned Manifest commit)
* Removing x86 keyword as dependency sci-biology/vaal does not work on x86Patrick Lauer2013-11-133-5/+9
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/vaal: Drop x86 as upstream gives no support and types are not ↵Justin Lecher2013-11-121-10/+20
| | | | | | easily fixable, #458488, #472088 & #488550 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/vaal: Drop x86 as upstream gives no support and types are not ↵Justin Lecher2013-11-125-11/+16
| | | | | | easily fixable, #458488, #472088 & #488550 (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Fix tarball and ist checksum, #490360Justin Lecher2013-11-061-16/+16
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Fix tarball and ist checksum, #490360Justin Lecher2013-11-061-1/+4
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Version BUmpJustin Lecher2013-11-051-7/+19
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/psipred: Version BUmpJustin Lecher2013-11-053-5/+67
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2013-11-021-15/+17
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* sci-biology/rebase: Version BUmpJustin Lecher2013-11-022-1/+52
| | | | (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
* Marked stable on AMD64 based on arch testing by Elijah "Armageddon" El ↵Tony Vroon2013-10-241-2/+12
| | | | | | Lazkani in bug #488414. (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 0xB5058F9A)