# ChangeLog for sci-biology/vienna-rna # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.47 2013/02/13 13:13:57 jlec Exp $ *vienna-rna-2.1.1 (13 Feb 2013) 13 Feb 2013; Justin Lecher +vienna-rna-2.1.1.ebuild, +files/vienna-rna-2.1.1-bindir.patch, +files/vienna-rna-2.1.1-impl-decl.patch, +files/vienna-rna-2.1.1-prll.patch, +files/vienna-rna-2.1.1-setup.py: Version Bump; move to EAPI=5, new python eclasses; autotools-utils 31 Jan 2013; Justin Lecher vienna-rna-1.8.5.ebuild, metadata.xml: Only call distutils phase functions with USE=python, #422899 10 Jul 2012; Justin Lecher -vienna-rna-1.8.4-r1.ebuild, -vienna-rna-1.8.4-r2.ebuild, metadata.xml: Cleaned old 10 Jul 2012; Brent Baude vienna-rna-1.8.5.ebuild: Marking vienna-rna-1.8.5 ppc for bug 393867 26 Feb 2012; Patrick Lauer vienna-rna-1.8.4-r1.ebuild, vienna-rna-1.8.5.ebuild: Restricting jython 21 Dec 2011; Pawel Hajdan jr vienna-rna-1.8.5.ebuild: x86 stable wrt bug #393867 16 Dec 2011; Agostino Sarubbo vienna-rna-1.8.5.ebuild: Stable for AMD64, wrt bug #393867 16 Dec 2011; Justin Lecher vienna-rna-1.8.5.ebuild: Add missing dep on dev-lang/swig, #394933 16 Dec 2011; Justin Lecher vienna-rna-1.8.5.ebuild: Handle static-libs 28 Jun 2011; Brent Baude vienna-rna-1.8.4-r1.ebuild: Marking vienna-rna-1.8.4-r1 ppc for bug 325459 03 May 2011; Justin Lecher vienna-rna-1.8.5.ebuild, +files/vienna-rna-1.8.5-setup.py: Added python support, #365793 20 Mar 2011; Justin Lecher vienna-rna-1.8.4-r1.ebuild, vienna-rna-1.8.4-r2.ebuild, vienna-rna-1.8.5.ebuild: Install Perl modules into vendor-dir, #349772 *vienna-rna-1.8.5 (20 Mar 2011) 20 Mar 2011; Justin Lecher vienna-rna-1.8.4-r1.ebuild, vienna-rna-1.8.4-r2.ebuild, +vienna-rna-1.8.5.ebuild: Version Bump *vienna-rna-1.8.4-r2 (15 Oct 2010) 15 Oct 2010; Kacper Kowalik -files/vienna-rna-1.7.2-disable-gd.patch, -files/vienna-rna-1.7.2-gcc4.3.patch, -files/vienna-rna-1.7.2-gcc4.4.patch, -vienna-rna-1.8.4.ebuild, +vienna-rna-1.8.4-r2.ebuild, +files/vienna-rna-1.8.4-implicits.patch, +files/vienna-rna-1.8.4-overflows.patch: Fix buffer overflows wrt bug 341089. Thanks to Diego for the report. Fix implicit function declarations. Drop old. 15 Jul 2010; Christian Faulhammer vienna-rna-1.8.4-r1.ebuild: stable x86, bug 325459 26 Jun 2010; Christoph Mende vienna-rna-1.8.4-r1.ebuild: Stable on amd64 wrt bug #325459 *vienna-rna-1.8.4-r1 (25 Jun 2010) 25 Jun 2010; Justin Lecher -vienna-rna-1.7.2.ebuild, -vienna-rna-1.8.3.ebuild, +vienna-rna-1.8.4-r1.ebuild, +files/vienna-rna-1.8.4-bindir.patch: Install ELFs in correct place, #300012 03 Apr 2010; Justin Lecher vienna-rna-1.8.4.ebuild, +files/vienna-rna-1.8.4-jobserver-fix.patch: jobserver fix, #304117, thanks Myckel 09 Feb 2010; Pacho Ramos vienna-rna-1.8.4.ebuild: amd64 stable, bug 298769 29 Dec 2009; Christian Faulhammer vienna-rna-1.8.4.ebuild: stable x86, bug 298769 *vienna-rna-1.8.4 (13 Nov 2009) 13 Nov 2009; Andrey Kislyuk +vienna-rna-1.8.4.ebuild: Version bump 02 Nov 2009; Markus Meier vienna-rna-1.8.3.ebuild: amd64/x86 stable, bug #290926 31 Oct 2009; Andrey Kislyuk vienna-rna-1.8.3.ebuild: Fix linking failure on x86 10 Sep 2009; Andrey Kislyuk vienna-rna-1.8.3.ebuild: Fix gcc-4.4 patching, bug 284539 *vienna-rna-1.8.3 (10 Sep 2009) 10 Sep 2009; Andrey Kislyuk +files/vienna-rna-1.8.3-gcc4.3.patch, +vienna-rna-1.8.3.ebuild: Version bump and cleanup 30 Jul 2009; Samuli Suominen vienna-rna-1.7.2.ebuild, +files/vienna-rna-1.7.2-gcc4.4.patch: Fix building with GCC 4.4 and GLIBC 2.10+ wrt #274044. Rename getline to v_getline. Missing include. 09 Oct 2008; Markus Dittrich vienna-rna-1.7.2.ebuild: Remove perlocal.pod file to avoid file collisions (see bug #240358). 06 Oct 2008; Markus Dittrich +files/vienna-rna-1.7.2-LDFLAGS.patch, +files/vienna-rna-1.7.2-disable-gd.patch, vienna-rna-1.7.2.ebuild: Fixed ignored LDFLAGS issues and bogus detection of GD support. Also enabled the tests that come with the package. *vienna-rna-1.7.2 (28 Aug 2008) 28 Aug 2008; Markus Dittrich +files/vienna-rna-1.7.2-gcc4.3.patch, -vienna-rna-1.6.1.ebuild, -vienna-rna-1.6.5.ebuild, +vienna-rna-1.7.2.ebuild: Version bump and removed old ebuilds (fixes bug #235943). Thanks much to Chad A. Simmons for his ebuild and patches. 06 Aug 2008; Ulrich Mueller metadata.xml: Add USE flag description to metadata wrt GLEP 56. *vienna-rna-1.7.0 (01 May 2008) 01 May 2008; Markus Dittrich +vienna-rna-1.7.0.ebuild: Version bump. *vienna-rna-1.6.5 (24 Nov 2007) 24 Nov 2007; Markus Dittrich +files/vienna-rna-1.6.5-c-fixes.patch, +vienna-rna-1.6.5.ebuild: Version bump (fixes bug #191882). 29 Apr 2007; Jeff Gardner vienna-rna-1.6.1.ebuild: Adding ~amd64. 22 Feb 2007; Markus Ullmann ChangeLog: Redigest for Manifest2 03 Nov 2006; Olivier Fisette -vienna-rna-1.6.ebuild: Pruned old version. 14 Sep 2006; Olivier Fisette metadata.xml: Stepping down from maintaining this package. *vienna-rna-1.6.1 (14 Sep 2006) 14 Sep 2006; Olivier Fisette +vienna-rna-1.6.1.ebuild: New upstream version. *vienna-rna-1.6 (03 Feb 2006) 03 Feb 2006; Olivier Fisette -vienna-rna-1.5_beta.ebuild, -vienna-rna-1.6_alpha.ebuild, +vienna-rna-1.6.ebuild: Removed alpha and beta versions. New version. Removed dependency on X11. *vienna-rna-1.6_alpha (19 Oct 2005) 19 Oct 2005; Olivier Fisette +vienna-rna-1.6_alpha.ebuild: New version. 30 Aug 2005; Olivier Fisette vienna-rna-1.5_beta.ebuild: Added to x86. 30 Jan 2005; Olivier Fisette vienna-rna-1.4.ebuild: Ebuild cleanup. *vienna-rna-1.5_beta (09 Jan 2005) 09 Jan 2005; Olivier Fisette +vienna-rna-1.5_beta.ebuild: Added new beta release (hard-masked). *vienna-rna-1.4 (23 Dec 2004) 23 Dec 2004; Olivier Fisette +metadata.xml, +vienna-rna-1.4.ebuild: Moved from app-sci/vienna-rna to sci-biology/vienna-rna. 31 Oct 2004; Olivier Fisette vienna-rna-1.4.ebuild: Added to x86. 23 Jun 2004; David Holm vienna-rna-1.4.ebuild: Added to ~ppc. *vienna-rna-1.4 (22 Jun 2004) 22 Jun 2004; Olivier Fisette vienna-rna-1.4.ebuild, metadata.xml : Initial import. Ebuild submitted by Olivier Fisette . Reference: Gentoo Bugzilla, bug #53734