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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 13:49:19 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 13:49:19 +0100 |
| commit | c371e248d4b8d2717acc82ed4f902d5c37d7787d (patch) | |
| tree | 76ecf10249bf6b4927008bd403caad7160832a53 /sci-biology/nanopolish | |
| parent | sci-biology/mip-scaffolder: EAPI bump (diff) | |
| download | sci-c371e248d4b8d2717acc82ed4f902d5c37d7787d.tar.gz sci-c371e248d4b8d2717acc82ed4f902d5c37d7787d.tar.bz2 sci-c371e248d4b8d2717acc82ed4f902d5c37d7787d.zip | |
sci-biology/nanopolish: EAPI bump
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/nanopolish')
| -rw-r--r-- | sci-biology/nanopolish/nanopolish-9999.ebuild | 11 |
1 files changed, 2 insertions, 9 deletions
diff --git a/sci-biology/nanopolish/nanopolish-9999.ebuild b/sci-biology/nanopolish/nanopolish-9999.ebuild index cea5cce27..5ca92904f 100644 --- a/sci-biology/nanopolish/nanopolish-9999.ebuild +++ b/sci-biology/nanopolish/nanopolish-9999.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit git-r3 @@ -12,7 +12,6 @@ EGIT_REPO_URI="https://github.com/jts/nanopolish.git" LICENSE="MIT" SLOT="0" KEYWORDS="" -IUSE="" # HDF5 is not thread safe by default and nanopolish currently requires a threadsafe HDF5. # This is one reason we download the compile it ourself (the main reason is to make it @@ -32,8 +31,6 @@ src_prepare(){ } src_compile(){ - # >=gcc-4.8 but <gcc-7 is needed - # https://github.com/jts/nanopolish/issues/145 emake HDF5="noinstall" EIGEN="noinstall" HTS="noinstall" HTS_LIB=-lhts HTS_INCLUDE=-I/usr/include/htslib EIGEN_INCLUDE=-I/usr/include/eigen3 # TODO: FAST5_INCLUDE=-I/usr/include/fast5 } @@ -42,7 +39,3 @@ src_install(){ dobin nanopolish # add scripts/ subdirectory to PATH } - -src_test(){ - nanopolish_test || die -} |