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Diffstat (limited to 'sci-biology/angsd')
-rw-r--r--sci-biology/angsd/Manifest1
-rw-r--r--sci-biology/angsd/angsd-0.933.ebuild (renamed from sci-biology/angsd/angsd-9999.ebuild)17
2 files changed, 8 insertions, 10 deletions
diff --git a/sci-biology/angsd/Manifest b/sci-biology/angsd/Manifest
new file mode 100644
index 000000000..8d9a2c42f
--- /dev/null
+++ b/sci-biology/angsd/Manifest
@@ -0,0 +1 @@
+DIST angsd-0.933.tar.gz 10566370 BLAKE2B 0955214ea4094df22f997f2721fe743c5e8f739261b1781d5622d0a6fadf99a77a24cbb84ab540bf93f088cb92cbb443da7a1393293a3c7595bfdd2541712a05 SHA512 3cc42ccd4cf8c3b03fe2da3226459a766b484a2810b5055fbed1c73d734bbc915efe75616841680065fc65101dd6f3229bdb1a3125b9ed0805e0c93e81fa8d7c
diff --git a/sci-biology/angsd/angsd-9999.ebuild b/sci-biology/angsd/angsd-0.933.ebuild
index a4711d244..9a37d2af6 100644
--- a/sci-biology/angsd/angsd-9999.ebuild
+++ b/sci-biology/angsd/angsd-0.933.ebuild
@@ -1,18 +1,15 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
-
-inherit git-r3
+EAPI=7
DESCRIPTION="Population genetics analysis package"
HOMEPAGE="http://www.popgen.dk/angsd"
-EGIT_REPO_URI="https://github.com/ANGSD/angsd.git"
+SRC_URI="https://github.com/ANGSD/angsd/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
-KEYWORDS=""
-IUSE=""
+KEYWORDS="~amd64"
DEPEND="
dev-lang/R
@@ -41,10 +38,10 @@ src_compile(){
}
src_install(){
+ einstalldocs
dobin angsd
- dodoc README.md
cd misc || die
dobin \
- supersim thetaStat realSFS emOptim2 msToGlf smartCount \
- printIcounts splitgl contamination NGSadmix
+ supersim haploToPlink ibs thetaStat realSFS msToGlf msHOT2glf smartCount \
+ printIcounts splitgl contamination contamination2 NGSadmix ngsPSMC scounts
}