From eb11c042a4a47b6b4ba249ab1e41e4117e51e21d Mon Sep 17 00:00:00 2001
From: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue, 25 Apr 2023 13:30:38 +0200
Subject: sci-biology/trans-abyss: treeclean

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
---
 profiles/package.mask                            |  1 -
 sci-biology/trans-abyss/Manifest                 |  1 -
 sci-biology/trans-abyss/metadata.xml             | 15 ----------
 sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild | 35 ------------------------
 4 files changed, 52 deletions(-)
 delete mode 100644 sci-biology/trans-abyss/Manifest
 delete mode 100644 sci-biology/trans-abyss/metadata.xml
 delete mode 100644 sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild

diff --git a/profiles/package.mask b/profiles/package.mask
index a8da49349..20d20abc8 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -33,4 +33,3 @@
 # Andrew Ammerlaan <andrewammerlaan@gentoo.org) (12 Jan 2023)
 # Needs bump of PYTHON_COMPAT to at least python3_10
 sci-biology/chiron
-sci-biology/trans-abyss
diff --git a/sci-biology/trans-abyss/Manifest b/sci-biology/trans-abyss/Manifest
deleted file mode 100644
index 9addb1899..000000000
--- a/sci-biology/trans-abyss/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST trans-abyss-2.0.1.tar.gz 359063 BLAKE2B 9b3f19b883e2616b05bc0677b9161e8c997596b288af7e570a83129549edd517a941f765d39dfb83638160e611df3f2acfc32eb944c7cca63c8350e77fb96246 SHA512 5362665a2758a76c579d8086f8904cf0e40c8dff0dfa1c82368b38af25e37f2f2852f60c3001db254e5f06400e9e2e7f6f6c301133b7806d47cee189f84a0f0f
diff --git a/sci-biology/trans-abyss/metadata.xml b/sci-biology/trans-abyss/metadata.xml
deleted file mode 100644
index 079fb5aae..000000000
--- a/sci-biology/trans-abyss/metadata.xml
+++ /dev/null
@@ -1,15 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>mmokrejs@fold.natur.cuni.cz</email>
-		<name>Martin Mokrejs</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
-	<upstream>
-		<remote-id type="github">bcgsc/transabyss</remote-id>
-	</upstream>
-</pkgmetadata>
diff --git a/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild b/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild
deleted file mode 100644
index cf10dd3b9..000000000
--- a/sci-biology/trans-abyss/trans-abyss-2.0.1.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7,8,9} )
-
-inherit python-r1
-
-DESCRIPTION="Analyze and combine multiple assemblies from abyss"
-HOMEPAGE="https://www.bcgsc.ca/resources/software/trans-abyss"
-SRC_URI="https://github.com/bcgsc/transabyss/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
-	dev-lang/perl
-	dev-python/python-igraph[${PYTHON_USEDEP}]
-	sci-biology/abyss
-	sci-biology/blat
-"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/transabyss-${PV}"
-
-src_install() {
-	einstalldocs
-	python_foreach_impl python_domodule utilities
-	dobin transabyss
-	dobin transabyss-merge
-}
-- 
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