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| author |   Michał Górny <mgorny@gentoo.org> | 2019-12-15 21:20:37 +0100 |
|---|---|---|
| committer | Michał Górny <mgorny@gentoo.org> | 2019-12-15 21:24:06 +0100 |
| commit | 1f2569486e5080071fbcf33caa048c6fdd3a1747 (patch) | |
| tree | 0d9f342f9c4f6ab27c0591f76272dae10b73fd88 /sci-biology/gatk | |
| parent | sci-biology/bioperl-run: Drop unmaintained -9999 (diff) | |
| download | gentoo-1f2569486e5080071fbcf33caa048c6fdd3a1747.tar.gz gentoo-1f2569486e5080071fbcf33caa048c6fdd3a1747.tar.bz2 gentoo-1f2569486e5080071fbcf33caa048c6fdd3a1747.zip | |
sci-biology/gatk: Drop broken -9999
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Diffstat (limited to 'sci-biology/gatk')
| -rw-r--r-- | sci-biology/gatk/gatk-9999.ebuild | 40 |
1 files changed, 0 insertions, 40 deletions
diff --git a/sci-biology/gatk/gatk-9999.ebuild b/sci-biology/gatk/gatk-9999.ebuild deleted file mode 100644 index fee2670ad219..000000000000 --- a/sci-biology/gatk/gatk-9999.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -EANT_BUILD_TARGET="dist" -EANT_NEEDS_TOOLS="true" -JAVA_ANT_REWRITE_CLASSPATH="true" - -inherit git-2 java-pkg-2 java-ant-2 - -DESCRIPTION="The Genome Analysis Toolkit" -HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit" -SRC_URI="" -EGIT_REPO_URI="https://github.com/broadgsa/gatk.git" - -LICENSE="MIT" -SLOT="0" -IUSE="" -KEYWORDS="" - -COMMON_DEPS="" -DEPEND=" - >=virtual/jdk-1.6 - dev-vcs/git - ${COMMON_DEPS}" -RDEPEND=" - >=virtual/jre-1.6 - ${COMMON_DEPS}" - -src_prepare() { - sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar dist/*.jar - java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar - java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar -} |