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* sci-libs/tensorflow-estimator: drop 2.8.0, 2.9.0Jason Zaman2022-11-193-154/+0
| | | | Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/keras: drop 2.8.0, 2.9.0Jason Zaman2022-11-195-821/+0
| | | | Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/miopen: Bump LLVM version to 15Jack de Kleuver2022-11-191-1/+1
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/28144 Signed-off-by: Jack de Kleuver <jackdekleuver@gmail.com> Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/umfpack: use HTTPSMichael Mair-Keimberger2022-11-191-1/+1
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/suitesparse: use HTTPSMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/suitesparseconfig: use HTTPSMichael Mair-Keimberger2022-11-191-1/+1
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/spqr: use HTTPSMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/plplot: use HTTPSMichael Mair-Keimberger2022-11-191-1/+1
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/mathgl: use HTTPS, fix LICENSEMichael Mair-Keimberger2022-11-191-3/+3
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/ldl: use HTTPSMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/klu: use HTTPSMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/itpp: use HTTPS, fix LICENSEMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/getdata: use HTTPS, fix LICENSEMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/gaul-devel: use HTTPS, fix LICENSEMichael Mair-Keimberger2022-11-191-3/+3
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cmpfit: use HTTPSMichael Mair-Keimberger2022-11-191-3/+3
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/atlas: use HTTPSMichael Mair-Keimberger2022-11-191-2/+2
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/armadillo: use HTTPSMichael Mair-Keimberger2022-11-194-6/+6
| | | | | Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/tensorflow: drop 2.8.0, 2.9.0Sam James2022-11-193-867/+0
| | | | | | Depends on old dev-util/nvidia-cuda-toolkit. Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/coinor-mp: keyword 1.8.4 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-cbc: keyword 2.10.5 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-cgl: keyword 0.60.3 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-vol: keyword 1.5.4 for ~loongWANG Xuerui2022-11-191-1/+1
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-dylp: keyword 1.10.4 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-clp: keyword 1.17.6-r1 for ~loongWANG Xuerui2022-11-191-1/+1
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-osi: keyword 0.108.6 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-utils: keyword 2.11.4 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/coinor-sample: keyword 1.2.12 for ~loongWANG Xuerui2022-11-191-2/+2
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/ginkgo: fix reference to dev-util/nvidia-cuda-sdkDavid Seifert2022-11-191-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/dealii: fix reference to dev-util/nvidia-cuda-sdkDavid Seifert2022-11-191-1/+1
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/symengine: Keyword 0.9.0-r3 ppc64, #871921Arthur Zamarin2022-11-181-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 sparc, #881027Arthur Zamarin2022-11-161-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/pcl: port changes from sci-libs/pcl-1.12.1-r1Bernd Waibel2022-11-121-6/+30
| | | | | | Closes: https://github.com/gentoo/gentoo/pull/27977 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/pcl: fix several issuesBernd Waibel2022-11-123-6/+84
| | | | | | | | | | | | | | | | | | | | | | | | | - enable cuda sandbox to avoid sandbox violation, #869674 - patch the code for several installation directories to conform to FHS. This is just a hack and should be done using GNUInstallDirs and provided upstream to solve it properly, #853886 - add a dependency on virtual/latex-base to avoid an additional QA issue on latex not found, because the doxyfile uses LaTeX by default. Also depend on doxygen[dot] to avoid a cmake warning about missing doxygen component - change test related cmake option to new value to avoid undefined cmake variables, #738996 - depend on dev-python/sphinx_rtd_theme to properly build tutorial docs with USE=tutorials, #849002 - restrict test, because it needs the gtest sources to be provided, the package alone seems not be enough. - fix hardcoded path for cmake files to be installed into /usr/share/cmake/ Closes: https://bugs.gentoo.org/869674 Closes: https://bugs.gentoo.org/853886 Closes: https://bugs.gentoo.org/738996 Closes: https://bugs.gentoo.org/849002 Signed-off-by: Bernd Waibel <waebbl-gentoo@posteo.net> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: add 0.3.21Michael Orlitzky2022-11-123-0/+434
| | | | | | | | | | I had to rebase the loongarch patch, and removed an old workaround for FFLAGS="-fcheck=bounds" in the test suite, but other than that a standard update. Bug: https://bugs.gentoo.org/726474 Closes: https://bugs.gentoo.org/878883 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 amd64, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 ppc64, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 hppa, #881027Sam James2022-11-121-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 ppc, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 x86, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 arm, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: Stabilize 3.10.1 arm64, #881027Sam James2022-11-111-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: add 3.11Sam James2022-11-112-0/+104
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/pdal: Keyword 2.4.3 arm64, #880759Arthur Zamarin2022-11-101-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/caffe2: Fix installation for Gentoo PrefixMarek Behún2022-11-102-6/+6
| | | | | | | | | | | Add EPREFIX to the TORCH_INSTALL_LIB_DIR and LIBSHM_INSTALL_LIB_SUBDIR library directories in src_configure() and use the ED instead of D variable in src_install() to fix the installation when installing in Gentoo Prefix. Signed-off-by: Marek Behún <kabel@kernel.org> Closes: https://github.com/gentoo/gentoo/pull/28208 Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/onnx: Fix install phase for Gentoo PrefixMarek Behún2022-11-101-2/+2
| | | | | | | | Use the ED instead of D variable in src_install() to fix the installation when installing in Gentoo Prefix. Signed-off-by: Marek Behún <kabel@kernel.org> Signed-off-by: Alfredo Tupone <tupone@gentoo.org>
* sci-libs/inchi: fix build w/ clang16, install ixa.hIonen Wolkens2022-11-081-4/+4
| | | | | | | | | Also add the lacking quotes around tc-getCC/CXX. Just quickfixes, ebuild feels rather fragile. Closes: https://bugs.gentoo.org/834488 Closes: https://bugs.gentoo.org/874696 Signed-off-by: Ionen Wolkens <ionen@gentoo.org>
* sci-libs/gsl: update LICENSEAndrew Ammerlaan2022-11-081-1/+1
| | | | | Closes: https://bugs.gentoo.org/880281 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/scikit-learn: Remove oldMichał Górny2022-11-075-238/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scikit-learn: Stabilize 1.1.2 x86, #879985Sam James2022-11-071-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: Stabilize 2.6.0-r1 amd64, #879253Sam James2022-11-061-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>