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* sci-libs/sundials: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-142-10/+14
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/nfft: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-12/+5
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/lis: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-15/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/libsvm: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-143-44/+39
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/hypre: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-142-20/+14
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ginkgo: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-141-5/+6
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/ceres-solver: [QA] tc-has-openmp → tc-check-openmpDavid Seifert2022-05-143-20/+8
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/gdal: add 3.5.0Sam James2022-05-142-0/+236
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/lapack: keyword 3.10.1 for ~loongWANG Xuerui2022-05-141-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/ta-lib: simplify for EAPI 8Sam James2022-05-131-5/+1
| | | | | | --disable-static is set by default with EAPI 8+ Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/ta-lib: Fix build with slibtoolorbea2022-05-132-0/+133
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes several issues with the build: * Renames configure.in to configure.ac as is standard. * Adds detection to configure.ac for libm to replaced the hardcoded instances of -lm. * Links internal dependencies with .la files rather than -l linker flags. The -l linker flags are for external dependencies exclusively and this can break with slibtool. * With slibtool there is a parellel make issue where gen_code binary is copied to ../../../bin before it is created and the Makefile.am needs to explicitly list gen_code as a prerequisite for the 'all-local' target. This probably happens because slibtool is significantly faster than GNU libtool. * Additionally slibtool will output the gen_code binary to the .libs directory while slibtool will do so in the Makefile directory. The command needs to be invoked with $(LIBTOOL) --mode=execute to correctly copy the binary and not the slibtool wrapper script for the binary. * Lastly there is a workaround for a slibtool bug where the cp(1) command is wrapped in a shell script. Invoking the command directly with --mode=execute will result in slibtool dropping the destination argument which obviously does not work. While this workaround is far from ideal, it will be portable for GNU libtool, slibtool now and slibtool when the bug is fixed. Bug: https://bugs.gentoo.org/790770 Upstream-PR: https://sourceforge.net/p/ta-lib/patches/6/ Signed-off-by: orbea <orbea@riseup.net> Closes: https://github.com/gentoo/gentoo/pull/25457 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/cantera: 2.6.0 version bumpSergey Torokhov2022-05-133-0/+205
| | | | | | | | | dev-python/pip is used to install python bindings and dev-python/pytest is used for python tests since this release Signed-off-by: Sergey Torokhov <torokhov-s-a@yandex.ru> Closes: https://github.com/gentoo/gentoo/pull/25357 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/openblas: keyword 0.3.20 for ~loongWANG Xuerui2022-05-131-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/openblas: run scrub-patch on openblas-0.3.20-fix-riscv.patchWANG Xuerui2022-05-131-17/+0
| | | | Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/openblas: fix build on loongWANG Xuerui2022-05-132-0/+179
| | | | | Closes: https://bugs.gentoo.org/844013 Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/netcdf: ppc64 stable wrt bug #830880Agostino Sarubbo2022-05-111-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/netcdf: ppc stable wrt bug #830880Agostino Sarubbo2022-05-101-1/+1
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-libs/matio: drop 1.5.21Andrew Ammerlaan2022-05-092-47/+0
| | | | | | Bug: https://bugs.gentoo.org/842258 Bug: https://bugs.gentoo.org/803131 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/matio: add 1.5.23Andrew Ammerlaan2022-05-092-0/+47
| | | | | | Bug: https://bugs.gentoo.org/842258 Bug: https://bugs.gentoo.org/803131 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-libs/cantera: Stabilize 2.5.1-r3 amd64, #842909Jakov Smolić2022-05-091-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gsl: keyword 2.7.1-r1 for ~loongWANG Xuerui2022-05-081-1/+1
| | | | | | Tests passed on real hardware. Signed-off-by: WANG Xuerui <xen0n@gentoo.org>
* sci-libs/ipopt: fix build with slibtoolØrjan Malde2022-05-071-1/+1
| | | | | | Closes: https://bugs.gentoo.org/800899 Signed-off-by: Ørjan Malde <red@foxi.me> Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 arm64, #842540Jakov Smolić2022-05-051-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 arm, #842543Arthur Zamarin2022-05-051-1/+1
| | | | Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
* sci-libs/ceres-solver: add 2.1.0Sam James2022-05-052-0/+107
| | | | | Closes: https://bugs.gentoo.org/842636 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: drop 3.8.1, 3.9.0-r2, 3.9.1, 3.10.1Sam James2022-05-055-179/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: drop 3.4.2Sam James2022-05-051-327/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/proj: drop 8.2.0Sam James2022-05-052-66/+0
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: restore missing changes from 3.4.2-r2Sam James2022-05-051-2/+4
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 amd64, #842540Jakov Smolić2022-05-041-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 x86, #842540Jakov Smolić2022-05-041-1/+1
| | | | Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
* sci-libs/gdal: add 3.4.3Sam James2022-05-042-0/+327
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 ppc64, #842543Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 ppc64, #842540Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 ppc, #842543Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/gdal: Stabilize 3.4.2-r2 ppc, #842540Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 x86, #842543Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/geos: Stabilize 3.10.2 amd64, #842543Sam James2022-05-041-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipBLAS: fix typo in DEPENDSam James2022-05-031-1/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hipSPARSE: call eend with a return value.Benda Xu2022-05-032-2/+2
| | | | | | Closes: https://bugs.gentoo.org/842411 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipSPARSE: bump to 5.0.2.Benda Xu2022-05-033-0/+232
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocSPARSE: bump to 5.0.2YiyangWu2022-05-034-0/+195
| | | | | | | | Enable navy_flounder cards via rocSPARSE-5.0.2-enable-gfx1031.patch Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocRAND: bump to version 5.0.2YiyangWu2022-05-032-0/+74
| | | | | | | | Tests all passed on single Radeon RX 6700XT (gfx1031) Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocThrust: bump to 5.0.2YiyangWu2022-05-032-0/+77
| | | | | | | | | Observed one failed test on gfx1031 though: https://github.com/ROCmSoftwarePlatform/rocThrust/issues/233 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hipCUB: bump to 5.0.2YiyangWu2022-05-032-0/+75
| | | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocPRIM: bump version to 5.0.2YiyangWu2022-05-032-0/+78
| | | | | | | | | | rocPRIM now supports RDNA2. Tests past on RX 6700XT. Paralell tests disabled due to device access conflict. All tests passed on single Radeon RX 6700XT Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/rocSOLVER: bump version to 5.0.2YiyangWu2022-05-033-0/+251
| | | | | | | | | | | According to https://github.com/ROCmSoftwarePlatform/rocSOLVER/issues/367#issuecomment-1099821708 hip and low-level runtimes of rocm does not need to be the same version with high-level libraries. Loosen dev-util/hip SLOT dependencies All tests passed on single Radeon RX 6700XT Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/hdf5: add link to upstream PR for patchSam James2022-05-031-0/+1
| | | | | Bug: https://github.com/HDFGroup/hdf5/pull/1716 Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: drop static libs in 1.12.2Sam James2022-05-031-0/+1
| | | | Signed-off-by: Sam James <sam@gentoo.org>
* sci-libs/hdf5: add 1.12.2Sam James2022-05-033-0/+283
| | | | | | | | Lots of correctness and sanitizer fixes in .2 so possibly helps with the sparc bug (although we've applied a workaround now anyway). Bug: https://bugs.gentoo.org/686620 Signed-off-by: Sam James <sam@gentoo.org>