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* sci-libs/scipy: Conditionally add -fallow-argument-mismatchDavid Seifert2020-06-172-0/+12
| | | | | | Closes: https://bugs.gentoo.org/721860 Package-Manager: Portage-2.3.101, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/arpack: [QA] Fix multiple violationsDavid Seifert2020-06-153-17/+13
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/arpack: Conditionally add -fallow-argument-mismatchDavid Seifert2020-06-152-2/+6
| | | | | | Closes: https://bugs.gentoo.org/727592 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/bmrblib: Bump to 1.0.4Pacho Ramos2020-06-132-0/+18
| | | | | | | Closes: https://bugs.gentoo.org/699766 Closes: https://bugs.gentoo.org/718490 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/libsvm: Bump to 3.24Pacho Ramos2020-06-132-0/+119
| | | | | | Bug: https://bugs.gentoo.org/718494 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-libs/openblas: disable -fcheck=all as well.Michael Orlitzky2020-06-111-1/+1
| | | | | | | | | | We already had to disable -fcheck-bounds, but -fcheck=all enables the bounds checks in addition to whatever else it enables, so we have to filter that flag too. Bug: https://bugs.gentoo.org/726474 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: earn respect for CFLAGS/FFLAGS.Michael Orlitzky2020-06-111-0/+4
| | | | | | | | | The upstream Makefile.system adds "-O2" to your C/FORTRAN flags if you don't tell it not to. Now we tell it not to, so that you can build at lower optimization levels like -O0. Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: don't clobber FFLAGS while building lapack.Michael Orlitzky2020-06-112-1/+35
| | | | | | | | | | | | | Nothing's ever easy, and bug 726474 is turning out to be no exception. The problem goes deeper than I originally thought; this commit adds a patch that prevents "rare and hard to reproduce crashes" when the user has custom FFLAGS set. A new revision was made to force rebuilds in case some user has mis-compiled the package. https://bugs.gentoo.org/726474 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/tnt: use HTTPSMichael Mair-Keimberger2020-06-111-3/+3
| | | | | | | Closes: https://github.com/gentoo/gentoo/pull/16188 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Michael Mair-Keimberger <m.mairkeimberger@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/oc: use HTTPSMichael Mair-Keimberger2020-06-111-3/+3
| | | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Michael Mair-Keimberger <m.mairkeimberger@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/dealii: use HTTPSMichael Mair-Keimberger2020-06-111-1/+1
| | | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Michael Mair-Keimberger <m.mairkeimberger@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org>
* sci-libs/openblas: remove older "unused" versions.Michael Orlitzky2020-06-103-256/+0
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: enlongen the longdesc in metadata.xml.Michael Orlitzky2020-06-101-20/+36
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: fix tests with fortran bounds checking enabled.Michael Orlitzky2020-06-101-2/+9
| | | | | | | | | | | | | | | | One OpenBLAS test fails when you enable bounds checks in your fortran compiler via e.g. either "-fbounds-check" or "-fcheck=bounds" with gfortran. This was reported upstream at https://github.com/xianyi/OpenBLAS/issues/2657 but in the meantime the easiest thing to do for *our* users is to filter out those flags when USE=test is set. Thanks to Bernd for reporting the problem on bug 726474. Closes: https://bugs.gentoo.org/726474 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: update obsolete github URL (tarball -> archive).Michael Orlitzky2020-06-101-1/+1
| | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/openblas: remove redundant dodirs in the latest version.Michael Orlitzky2020-06-101-2/+0
| | | | | | | | | Bernd noticed this while working on bug 726474. This part of the changeset is obviously correct, so let's get it out of the way. Bug: https://bugs.gentoo.org/726474 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/trilinos: fix compilation and fix installation pathsMatthias Maier2020-06-101-0/+3
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Matthias Maier <tamiko@gentoo.org>
* sci-libs/scipy: Add python@ as (co-)maintMichał Górny2020-06-101-0/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scipy: Revert "-fallow-argument-mismatch for gfortran v10"Michał Górny2020-06-101-3/+0
| | | | | | This breaks older gcc versions. Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/fftw: re-add CPU_FLAGS_PPCGeorgy Yakovlev2020-06-093-7/+7
| | | | | | | | | | changes made in 480391553a377349046f7fd2b62e2df37ef29752 were lost in 67a3fff18cedaf357e1a8cff0eae5f8aaf4824eb re-add them back Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
* sci-libs/openblas: fix AR usage in the latest version.Michael Orlitzky2020-06-091-2/+4
| | | | | | | | | Upstream sets $AR unconditionally in a non-autotools Makefile, so we have to try extra hard to override it. Closes: https://bugs.gentoo.org/725608 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org>
* sci-libs/volk: add comment for build_typeRick Farina2020-06-081-0/+2
| | | | | | | | this will help me to remember to remove the override when upstream adds the fix Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/volk: bug #727130Rick Farina2020-06-081-0/+3
| | | | | | | this is a more complete fix than just setting the deps properly Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/volk: make ebuild less trashRick Farina2020-06-082-34/+45
| | | | | | | also fix bug #727130 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Rick Farina <zerochaos@gentoo.org>
* sci-libs/tensorflow-estimator: fix compile errorJason Zaman2020-06-081-6/+11
| | | | | | | | | The bazel build step used the incorrect python, so duplicate the sources and build multiple times Closes: https://bugs.gentoo.org/725856 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Jason Zaman <perfinion@gentoo.org>
* sci-libs/arpack: Fix build with gcc10Alexey Shvetsov2020-06-083-16/+18
| | | | | | Closes: https://bugs.gentoo.org/721858 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/scipy: -fallow-argument-mismatch for gfortran v10Alexei Colin2020-06-081-0/+3
| | | | | | | | | | | Already fixed in upstream master: https://github.com/scipy/scipy/pull/11842 Closes: https://bugs.gentoo.org/721860 Signed-off-by: Alexei Colin <acolin@isi.edu> Closes: https://github.com/gentoo/gentoo/pull/16093 Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>
* sci-libs/dealii: update homepage linkJakov Smolic2020-06-062-2/+2
| | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Aaron Bauman <bman@gentoo.org>
* sci-libs/alglib: update homepage linkLuka Perkov2020-06-061-3/+3
| | | | | | | Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Luka Perkov <luka.perkov@sartura.hr> Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> Signed-off-by: Aaron Bauman <bman@gentoo.org>
* sci-libs/oce: Drop 0.18.3-r1Andreas Sturmlechner2020-06-061-78/+0
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/oce: Use cmake.eclass, EAPI-7, unused eclass, unrestrict VTKAndreas Sturmlechner2020-06-061-0/+78
| | | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 RepoMan-Options: --force Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: python3_8Andreas Sturmlechner2020-06-062-1/+177
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: More IUSE sortingAndreas Sturmlechner2020-06-061-1/+1
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix build with -fno-commonAndreas Sturmlechner2020-06-062-0/+41
| | | | | | | Thanks-to: Tiernan Hubble <tiernanhubble+gentoo@gmail.com> Closes: https://bugs.gentoo.org/721048 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Drop 8.1.0-r7Andreas Sturmlechner2020-06-062-344/+0
| | | | | | | 8.2.0 is now very slightly less broken than this. Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Switch to cmake.eclassAndreas Sturmlechner2020-06-061-4/+4
| | | | | Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: *Only* run cmake-utils_src_prepare in src_prepareAndreas Sturmlechner2020-06-061-3/+1
| | | | | | | Because default was invoked as well, patches were applied twice... Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix CMake detection of GCC 10Andreas Sturmlechner2020-06-062-0/+17
| | | | | | | Thanks-to: Tiernan Hubble <tiernanhubble+gentoo@gmail.com> Closes: https://bugs.gentoo.org/723374 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix build with Qt 5.15Andreas Sturmlechner2020-06-062-0/+38
| | | | | | Closes: https://bugs.gentoo.org/726960 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Fix EAPI-7 bump and break up python_gen_cond_dep scopeAndreas Sturmlechner2020-06-061-30/+33
| | | | | | | Sorting, BDEPEND, quotes and indendation Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/mkl: Drop 10.0.5.025 (r0) and the package to ~archAndreas Sturmlechner2020-06-062-388/+0
| | | | | | Bug: https://bugs.gentoo.org/601580 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/sundials: Fix unused CMake variablesAndreas Sturmlechner2020-06-061-3/+7
| | | | | | Closes: https://bugs.gentoo.org/659268 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/dlib: Drop 19.4, 19.7 and 19.16 (r0)Andreas Sturmlechner2020-06-064-254/+0
| | | | | | Closes: https://bugs.gentoo.org/659262 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/dlib: Add REQUIRED_USE="python? ( png )"Andreas Sturmlechner2020-06-061-1/+1
| | | | | | Closes: https://bugs.gentoo.org/690718 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/dlib: EAPI-7 bump, cmake.eclass, drop IUSE="static-libs"Andreas Sturmlechner2020-06-061-0/+106
| | | | | | | | | EAPI-7 gives us BUILD_SHARED_LIBS=ON by default. Closes: https://bugs.gentoo.org/725466 Closes: https://bugs.gentoo.org/708330 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Add missing dependenciesAndreas K. Hüttel2020-06-061-0/+4
| | | | | | | | | Closes: https://bugs.gentoo.org/723460 Closes: https://bugs.gentoo.org/727078 Closes: https://bugs.gentoo.org/727080 Closes: https://bugs.gentoo.org/723000 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/mkl: Try to fix patch for eapplyAndreas Sturmlechner2020-06-051-2/+2
| | | | | | Bug: https://bugs.gentoo.org/601580 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-libs/vtk: Add missing dependency on dev-libs/pugixmlAndreas K. Hüttel2020-06-061-0/+1
| | | | | | Closes: https://bugs.gentoo.org/722770 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
* sci-libs/scipy: Port to py39Michał Górny2020-06-051-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-libs/scipy: Remove unmaintained live ebuildMichał Górny2020-06-051-126/+0
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>