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| author |   Olivier Fisette <ribosome@gentoo.org> | 2005-10-04 00:06:31 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2005-10-04 00:06:31 +0000 |
| commit | c89d0af795c8ad5cab8cd8816eefe74f9f7cd050 (patch) | |
| tree | e24671242bbaba96368572ac36691df9e3c67d7f /sci-biology/embassy-domainatrix | |
| parent | New release: 2.12.1. Removing old ebuilds. (diff) | |
| download | historical-c89d0af795c8ad5cab8cd8816eefe74f9f7cd050.tar.gz historical-c89d0af795c8ad5cab8cd8816eefe74f9f7cd050.tar.bz2 historical-c89d0af795c8ad5cab8cd8816eefe74f9f7cd050.zip | |
Removing obsolete embassy packages
Package-Manager: portage-2.0.51.22-r2
Diffstat (limited to 'sci-biology/embassy-domainatrix')
4 files changed, 6 insertions, 64 deletions
diff --git a/sci-biology/embassy-domainatrix/ChangeLog b/sci-biology/embassy-domainatrix/ChangeLog index 3de69ba3c813..a3e4d1595c29 100644 --- a/sci-biology/embassy-domainatrix/ChangeLog +++ b/sci-biology/embassy-domainatrix/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/embassy-domainatrix # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.13 2005/10/03 23:54:12 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/ChangeLog,v 1.14 2005/10/04 00:06:30 ribosome Exp $ + + 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> + -files/embassy-domainatrix-1.0.0-r1.patch, + -embassy-domainatrix-1.0.0-r1.ebuild: + Removed obsolete version. 03 Oct 2005; Olivier Fisette <ribosome@gentoo.org> embassy-domainatrix-0.1.0.ebuild: diff --git a/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild b/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild deleted file mode 100644 index 4d00681c2000..000000000000 --- a/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild +++ /dev/null @@ -1,11 +0,0 @@ -# Copyright 1999-2005 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domainatrix/embassy-domainatrix-1.0.0-r1.ebuild,v 1.5 2005/08/07 21:41:10 ribosome Exp $ - -EBOV="2.10.0" - -inherit embassy - -DESCRIPTION="Protein domain analysis add-on package for EMBOSS" - -KEYWORDS="ppc ppc-macos x86" diff --git a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-1.0.0-r1 b/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-1.0.0-r1 deleted file mode 100644 index d48048232a0a..000000000000 --- a/sci-biology/embassy-domainatrix/files/digest-embassy-domainatrix-1.0.0-r1 +++ /dev/null @@ -1,2 +0,0 @@ -MD5 4a48388ced7021a8ffece5166c40a364 EMBOSS-2.10.0.tar.gz 16262124 -MD5 78e1145851073a277e568ee3a691d999 DOMAINATRIX-1.0.0.tar.gz 551090 diff --git a/sci-biology/embassy-domainatrix/files/embassy-domainatrix-1.0.0-r1.patch b/sci-biology/embassy-domainatrix/files/embassy-domainatrix-1.0.0-r1.patch deleted file mode 100644 index 21e54040e999..000000000000 --- a/sci-biology/embassy-domainatrix/files/embassy-domainatrix-1.0.0-r1.patch +++ /dev/null @@ -1,50 +0,0 @@ ---- src/pdbparse.c.old 2005-03-25 12:12:50.000000000 -0500 -+++ src/pdbparse.c 2005-03-25 10:55:57.000000000 -0500 -@@ -240,7 +240,7 @@ - - /* Parse pdb file and write pdb structure */ - if(!(pdb=ajPdbReadRawNew(pdb_inf, pdbid, min_chain_size, max_mismatch, -- camask, camask1, atommask, logf))) -+ 0, camask, camask1, atommask, logf))) - { - ajFmtPrintS(&msg, "Clean coordinate file not generated for %S", temp); - ajWarn(ajStrStr(msg)); ---- src/scopnr.c.old 2005-03-25 12:17:40.000000000 -0500 -+++ src/scopnr.c 2005-03-25 11:11:28.000000000 -0500 -@@ -324,10 +324,10 @@ - /* Remove redundancy from list_seqs*/ - if(moden==1) - ret=embDmxSeqNR(list_seqs, &keep, &nsetnr, matrix, gapopen, -- gapextend,thresh); -+ gapextend,thresh, FALSE); - else - ret=embDmxSeqNRRange(list_seqs, &keep, &nsetnr, matrix, gapopen, -- gapextend,threshlow, threshup); -+ gapextend,threshlow, threshup, FALSE); - if(!ret) - { - ajStrDel(&last_fam); -@@ -464,10 +464,10 @@ - /* Remove redundancy from list_seqs*/ - if(moden==1) - embDmxSeqNR(list_seqs, &keep, &nsetnr, matrix, gapopen, -- gapextend,thresh); -+ gapextend,thresh, FALSE); - else - embDmxSeqNRRange(list_seqs, &keep, &nsetnr, matrix, gapopen, -- gapextend,threshlow, threshup); -+ gapextend,threshlow, threshup, FALSE); - - /* Write file with SCOP entries that are retained*/ - for(iter=ajListIterRead(list_scop), x=0; ---- src/seqnr.c.old 2005-03-25 12:19:34.000000000 -0500 -+++ src/seqnr.c 2005-03-25 11:13:42.000000000 -0500 -@@ -829,7 +829,7 @@ - - /* Remove the redundancy from the sequence set */ - /*JISON*/ keep = ajIntNew(); -- embDmxSeqNR(famin_seqs, &keep, &nsetnr, matrix, gapopen, gapextend, thresh); -+ embDmxSeqNR(famin_seqs, &keep, &nsetnr, matrix, gapopen, gapextend, thresh, FALSE); - - /* clean up famin_seqs */ - iter=ajListIterRead(famin_seqs); |