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| author |   Donnie Berkholz <dberkholz@gentoo.org> | 2008-03-21 21:23:44 +0000 |
|---|---|---|
| committer | Donnie Berkholz <dberkholz@gentoo.org> | 2008-03-21 21:23:44 +0000 |
| commit | ef802717bdee804e4d9388fb2f7c540cfe32ece8 (patch) | |
| tree | c9b28771ba19656f42973b5dabe12f40de3a794f /sci-biology/muscle | |
| parent | x86 stable, bug #209100 (diff) | |
| download | historical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.tar.gz historical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.tar.bz2 historical-ef802717bdee804e4d9388fb2f7c540cfe32ece8.zip | |
Bump. Bug fixes and undocumented new features.
Package-Manager: portage-2.1.4.4
Diffstat (limited to 'sci-biology/muscle')
| -rw-r--r-- | sci-biology/muscle/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/muscle/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/muscle/muscle-3.7.ebuild | 38 |
3 files changed, 58 insertions, 3 deletions
diff --git a/sci-biology/muscle/ChangeLog b/sci-biology/muscle/ChangeLog index de72cd679675..98d26dd5e515 100644 --- a/sci-biology/muscle/ChangeLog +++ b/sci-biology/muscle/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/muscle -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.8 2007/12/31 15:40:36 je_fro Exp $ +# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/ChangeLog,v 1.9 2008/03/21 21:23:44 dberkholz Exp $ + +*muscle-3.7 (21 Mar 2008) + + 21 Mar 2008; Donnie Berkholz <dberkholz@gentoo.org>; +muscle-3.7.ebuild: + Bump. Bug fixes and undocumented new features. 31 Dec 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog: fixing my email addy diff --git a/sci-biology/muscle/Manifest b/sci-biology/muscle/Manifest index a3f40f39eb52..fe3b0e3519eb 100644 --- a/sci-biology/muscle/Manifest +++ b/sci-biology/muscle/Manifest @@ -1,4 +1,16 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + DIST muscle3.6_src.tar.gz 185267 RMD160 4afda92b982ec2b05853a582479c61a7d8814f51 SHA1 e8a4998ee10a8f067fd1ba63966e32e69da62d36 SHA256 32b818a51f421e1d687f513dc31374a330470950151a5e7df961e64781699431 +DIST muscle3.7_src.tar.gz 189907 RMD160 6eb64afd2032914781f453b925589c35e432b96c SHA1 6a3cbef3a8a00cf230f17bf90592f7108607d103 SHA256 a028f545612f9d260e35909959e98ae7aec552b1eac8806c3ae59cf1b00f7235 EBUILD muscle-3.6.ebuild 825 RMD160 5c2e68629d7197f7e32cc4508a4a463e908fde9d SHA1 2e5dfe63244ee714fdfbd927672fc8d7dafdae6b SHA256 d855755012cbf3ad81a67cc1583bf58e080b35c2f78f756b7cc5a4c2b41470bd -MISC ChangeLog 1195 RMD160 b9049243629ee6a15da67f525d583f280911399d SHA1 5771a73869b6e67b445668953e5b3648a1d04711 SHA256 e01c55184e9c998d20a678ef71c968648a6350f7382560beb4f4ea32b713357a +EBUILD muscle-3.7.ebuild 825 RMD160 e6c35313339f5fc88335ca67fff7e4b611dd0f71 SHA1 4dacfcc7bc9cdb2112fac98d20c56f0e9cb71f14 SHA256 71e7761587be1614148abad00578fd4fb19c7b7572ed86b136a4c2f5eefd3dca +MISC ChangeLog 1350 RMD160 76fe19bc658b890017bfe317e47da53d31d0f755 SHA1 a971d9387c43a8fd11904627684dea0a72884084 SHA256 3574e30a3e43264e4c9c33f9697c45672a41c020538af52c29ba81ef8ce9af63 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.7 (GNU/Linux) + +iD8DBQFH5CdoXVaO67S1rtsRAngoAJ9YI33JVcuwZrcP9Mn7PVisGcN0KQCghk2a +/fj7R28H1dXBluTWpUcyeo0= +=Zt0f +-----END PGP SIGNATURE----- diff --git a/sci-biology/muscle/muscle-3.7.ebuild b/sci-biology/muscle/muscle-3.7.ebuild new file mode 100644 index 000000000000..346ccedb1ae5 --- /dev/null +++ b/sci-biology/muscle/muscle-3.7.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2008 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/muscle/muscle-3.7.ebuild,v 1.1 2008/03/21 21:23:44 dberkholz Exp $ + +inherit toolchain-funcs + +MY_P="${PN}${PV}_src" +DESCRIPTION="Multiple sequence comparison by log-expectation" +HOMEPAGE="http://www.drive5.com/muscle/" +SRC_URI="http://www.drive5.com/muscle/downloads${PV}/${MY_P}.tar.gz" +LICENSE="public-domain" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}" + +src_unpack() { + unpack ${A} + sed -i \ + "s:-static::g" \ + "${S}/Makefile" + sed -i \ + "/strip/d" \ + "${S}/Makefile" +} + +src_compile() { + emake \ + GPP="$(tc-getCXX)" \ + CFLAGS="${CXXFLAGS}" \ + || die "make failed" +} + +src_install() { + DESTTREE="/usr" dobin muscle +} |