Remove package

4 files changed, 0 insertions, 118 deletions

diff --git a/sci-biology/staden-bin/ChangeLog b/sci-biology/staden-bin/ChangeLog
deleted file mode 100644
index 2054bc8e1675..000000000000
--- a/sci-biology/staden-bin/ChangeLog
+++ /dev/null
@@ -1,20 +0,0 @@
-# ChangeLog for sci-biology/staden-bin
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden-bin/ChangeLog,v 1.4 2009/03/24 21:14:37 ribosome Exp $
-
-  24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
-  Giving up maintainership of this package.
-
-  25 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> staden-bin-1.7.0.ebuild:
-  QA: Removed redundant src_compile().
-
-  22 Oct 2006; Olivier Fisette <ribosome@gentoo.org>
-  staden-bin-1.7.0.ebuild:
-  Explicitely removed all arches (-*) except ~x86.
-
-*staden-bin-1.7.0 (22 Oct 2006)
-
-  22 Oct 2006; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
-  +staden-bin-1.7.0.ebuild:
-  Initial import. Fixes bug #120446.
-
diff --git a/sci-biology/staden-bin/Manifest b/sci-biology/staden-bin/Manifest
deleted file mode 100644
index dd00f99968ed..000000000000
--- a/sci-biology/staden-bin/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST staden-linux-x86-1-7-0.tar.gz 38515727 RMD160 99dd575a9682719cdd8cff35dbd13c5073c61b32 SHA1 31014bb1a453b024fd4e969664da5acf6f7fc169 SHA256 38c96b2df886ebb2407e21bd3c0059d632c2db9a6a7ab707f31c90f6db9e5e0e
-EBUILD staden-bin-1.7.0.ebuild 2907 RMD160 947104dab92595fbe53574bab6ecb06a086c11b6 SHA1 ecb418c3dfc97b7949253bc02dda3aa6de4b092c SHA256 2e5cccc98215a3279318e9bc01a2bfb079882de5839a2016cbb583b7edce5bb1
-MISC ChangeLog 747 RMD160 f8f5c9757fb677a3f46112cb2b0511837167c1f5 SHA1 6686e90b9e744a001a92b4090d842b6a41baa972 SHA256 7c0f3649a26a6fce66aa48da0a46260ab49ca5cc7ffae5bcd9d7ccf1f34ac04d
-MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132
diff --git a/sci-biology/staden-bin/metadata.xml b/sci-biology/staden-bin/metadata.xml
deleted file mode 100644
index d4648212cbad..000000000000
--- a/sci-biology/staden-bin/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<herd>sci-biology</herd>
-</pkgmetadata>
diff --git a/sci-biology/staden-bin/staden-bin-1.7.0.ebuild b/sci-biology/staden-bin/staden-bin-1.7.0.ebuild
deleted file mode 100644
index 240e2c6351be..000000000000
--- a/sci-biology/staden-bin/staden-bin-1.7.0.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/staden-bin/staden-bin-1.7.0.ebuild,v 1.3 2007/03/25 03:14:39 kugelfang Exp $
-
-inherit multilib
-
-DESCRIPTION="The Staden Package - Biological sequence handling and analysis"
-LICENSE="staden"
-HOMEPAGE="http://staden.sourceforge.net"
-SRC_URI="mirror://sourceforge/staden/staden-linux-x86-${PV//./-}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="-* ~x86"
-
-ITCLTK_PV="3.3"
-IWIDGETS_PV="4.0.1"
-
-RDEPEND="app-shells/pdksh
-	=media-libs/libpng-1.2*
-	=sci-libs/io_lib-1.10*
-	~dev-tcltk/itcl-${ITCLTK_PV}
-	~dev-tcltk/itk-${ITCLTK_PV}
-	~dev-tcltk/iwidgets-${IWIDGETS_PV}
-	x11-libs/libX11"
-
-S="${WORKDIR}/staden-linux-x86-${PV//./-}"
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# Remove Gentoo-provided libraries.
-	rm lib/linux-binaries/libpng* || die "Could not remove libpng."
-	rm -r lib/itcl${ITCLTK_PV} || die "Could not remove itcl."
-	rm -r lib/itk${ITCLTK_PV} || die "Could not remove itk."
-	rm lib/iwidgets || die "Could not remove iwidgets."
-
-	# Remove executables provided by the io_lib package.
-	for i in append_sff convert_trace extract_seq get_comment hash_extract \
-			hash_sff hash_tar index_tar makeSCF scf_dump scf_info scf_update \
-			trace_dump ztr_dump; do
-		rm linux-bin/${i} || die "Could not remove io_lib program: ${i}."
-	done
-
-	# Remove the help program, which is only a wrapper to launch netscape
-	# with a non-existent hypertext file.
-	rm linux-bin/staden_help || die "Could not remove staden-help."
-
-	# Remove broken prebuilt EMBOSS tcl/tk GUIs.
-	rm tables/emboss_menu
-	rm -r lib/spin_emboss/acdtcl
-	rm -r lib/spin2_emboss/acdtcl
-
-	sed -e 's:/usr/bin/nawk:/usr/bin/awk:' -i linux-bin/fasta-split || \
-			die "Could not patch fasta-split."
-	sed -e 's:/usr/local/badger/gap4_test:/opt/staden:' \
-			-i linux-bin/finish_cDNA -i linux-bin/finish_cDNA_ends_only || \
-			die "Could not patch finish_cDNA"
-}
-
-src_install() {
-	# There is no Makefile.
-	dodir /opt/staden
-	cp -R "${S}"/* "${D}"/opt/staden/ || die "Could not copy package files."
-	dosym /opt/staden/doc /usr/share/doc/${PF} || die "Could not symlink docs."
-
-	# Staden programs look for the tcl/tk/itcl/itk/iwidgets libraries in the
-	# package root.
-	dosym /usr/$(get_libdir)/itcl${ITCLTK_PV} /opt/staden/lib/itcl${ITCLTK_PV} \
-			|| die "Could not symlink itcl."
-	dosym /usr/$(get_libdir)/itk${ITCLTK_PV} /opt/staden/lib/itk${ITCLTK_PV} \
-			|| die "Could not symlink itk."
-	dosym /usr/$(get_libdir)/iwidgets${IWIDGETS_PV} /opt/staden/lib/iwidgets \
-			|| die "Could not symlink iwidgets."
-
-	dodir /etc/env.d
-	cat <<- EOF > "${D}"/etc/env.d/60staden
-		STADENROOT="/opt/staden"
-	EOF
-}
-
-pkg_postinst() {
-	echo
-	einfo "Before using Staden applications, csh users should source"
-	einfo "\"/opt/staden/staden.login\", whilst bash users should source"
-	einfo "\"/opt/staden/staden.profile\"."
-	echo
-}