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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-09 14:33:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-09 14:33:31 +0000 |
| commit | 7050e1cf1c8cbc8778f71c185bd8b26b58bcdd53 (patch) | |
| tree | 1402a0939407fe1fc3e4a519bceabc7ea69a7f52 /sci-biology | |
| parent | stable x86, bug 277187 (diff) | |
| download | historical-7050e1cf1c8cbc8778f71c185bd8b26b58bcdd53.tar.gz historical-7050e1cf1c8cbc8778f71c185bd8b26b58bcdd53.tar.bz2 historical-7050e1cf1c8cbc8778f71c185bd8b26b58bcdd53.zip | |
Import from Science overlay
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/infernal/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/infernal/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/infernal/infernal-1.0.ebuild | 30 | ||||
| -rw-r--r-- | sci-biology/infernal/metadata.xml | 9 |
4 files changed, 56 insertions, 0 deletions
diff --git a/sci-biology/infernal/ChangeLog b/sci-biology/infernal/ChangeLog new file mode 100644 index 000000000000..bcc2344bfd78 --- /dev/null +++ b/sci-biology/infernal/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/infernal +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.1 2009/07/09 14:33:31 weaver Exp $ + +*infernal-1.0 (09 Jul 2009) + + 09 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +infernal-1.0.ebuild: + Import from Science overlay + + 08 Mar 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package, ebuild written by me + diff --git a/sci-biology/infernal/Manifest b/sci-biology/infernal/Manifest new file mode 100644 index 000000000000..35173baeabab --- /dev/null +++ b/sci-biology/infernal/Manifest @@ -0,0 +1,4 @@ +DIST infernal.tar.gz 15032429 RMD160 3438e28ed0cd895a34d6eacc230c34f58b3f95ce SHA1 19c16b32c11fdcfd21a7ff7c5c127c0f9ead08fd SHA256 099d322c1aa1434f9a37379375f24e02cf4eceb102b12690ba1c65958a73999f +EBUILD infernal-1.0.ebuild 824 RMD160 7456131ce610c64996ae837103b6efff665fed83 SHA1 a30750fc59fc76cc5721dec02f01a2a46a5f97c9 SHA256 8a02e8f365f88f611094cdb19d5840f3b3eb2bbb7ee41e469038cc283b345e16 +MISC ChangeLog 460 RMD160 e29df071307d4f46f9972448e01aae09788af1c1 SHA1 128c20ad89b49378f48a41429ee6da3b21e4fb88 SHA256 d404de8f00bd09a19772e82f7259c11e81fe0f439baf27158b5769a47538b19c +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/infernal/infernal-1.0.ebuild b/sci-biology/infernal/infernal-1.0.ebuild new file mode 100644 index 000000000000..9e1ea171a272 --- /dev/null +++ b/sci-biology/infernal/infernal-1.0.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.ebuild,v 1.1 2009/07/09 14:33:31 weaver Exp $ + +EAPI="2" + +DESCRIPTION="Inference of RNA alignments" +HOMEPAGE="http://infernal.janelia.org/" +SRC_URI="ftp://selab.janelia.org/pub/software/infernal/infernal.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="mpi" +KEYWORDS="~amd64 ~x86" + +DEPEND="mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +src_configure() { + econf --prefix="${D}/usr" \ + $(use_enable mpi) || die +} + +src_install() { + emake install || die + (cd documentation/manpages; for i in *; do newman ${i} ${i/.man/.1}; done) + insinto /usr/share/${PN} + doins -r benchmarks tutorial intro matrices + dodoc 00README* Userguide.pdf documentation/release-notes/* +} diff --git a/sci-biology/infernal/metadata.xml b/sci-biology/infernal/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/infernal/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |