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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-11-25 03:39:14 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-11-25 03:39:14 +0000 |
| commit | 85d3656531fb7906bd5707ff3faa9e5ec0e4b142 (patch) | |
| tree | 419a59ab62d20b1a601e0cc9188a00c1c5487f41 /sci-biology | |
| parent | New license for sci-biology/abyss (diff) | |
| download | historical-85d3656531fb7906bd5707ff3faa9e5ec0e4b142.tar.gz historical-85d3656531fb7906bd5707ff3faa9e5ec0e4b142.tar.bz2 historical-85d3656531fb7906bd5707ff3faa9e5ec0e4b142.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/abyss/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/abyss/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/abyss/abyss-1.0.16.ebuild | 25 | ||||
| -rw-r--r-- | sci-biology/abyss/metadata.xml | 9 |
4 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog new file mode 100644 index 000000000000..0ebd9a1351a4 --- /dev/null +++ b/sci-biology/abyss/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/abyss +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.1 2009/11/25 03:39:14 weaver Exp $ + +*abyss-1.0.16 (24 Nov 2009) + + 24 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +abyss-1.0.16.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest new file mode 100644 index 000000000000..f31fe3b72ccd --- /dev/null +++ b/sci-biology/abyss/Manifest @@ -0,0 +1,4 @@ +DIST abyss-1.0.16.tar.gz 255004 RMD160 253cb9c16e68bf061a8c7d8bd9df770cdfe5eb9b SHA1 5de52b4d8a3ca6e72daeb9a7afcc28d7e0b52514 SHA256 5eb0ef67a7288da353d22bc1ecd5aa7d6b4c63498a0f8f3c8ee72cb063969761 +EBUILD abyss-1.0.16.ebuild 691 RMD160 1479780f5cdc2d0dd6c97154ec2cd71a8dbf8c7c SHA1 071fc4c65a815fa82ea20143d6a28e5738750165 SHA256 296ec000314d55dbf9bc505f952005d293c89229da5ae5db3b5dcf3f4171fcf2 +MISC ChangeLog 362 RMD160 15737b2854c3d793c4aa7a07cf2bd4ecf762527d SHA1 35f0c23b93cb7849541c84281c176c776a9e1d7c SHA256 4c55bf7d32a5c9cf893fcea54f53f033cdd72072c8e6da4ee8d1af7073d5fae7 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/abyss/abyss-1.0.16.ebuild b/sci-biology/abyss/abyss-1.0.16.ebuild new file mode 100644 index 000000000000..a733e1827800 --- /dev/null +++ b/sci-biology/abyss/abyss-1.0.16.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.0.16.ebuild,v 1.1 2009/11/25 03:39:14 weaver Exp $ + +EAPI="2" + +DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler" +HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss" +SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz" + +LICENSE="abyss" +SLOT="0" +IUSE="+mpi" +KEYWORDS="~amd64 ~x86" + +DEPEND="dev-cpp/sparsehash + mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +# todo: --enable-maxk=N configure option +# todo: fix automagic mpi toggling + +src_install() { + einstall || die +} diff --git a/sci-biology/abyss/metadata.xml b/sci-biology/abyss/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/abyss/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |