diff options
| -rw-r--r-- | sci-chemistry/pymol/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-chemistry/pymol/Manifest | 32 | ||||
| -rw-r--r-- | sci-chemistry/pymol/pymol-1.7.0.4.ebuild | 100 |
3 files changed, 124 insertions, 15 deletions
diff --git a/sci-chemistry/pymol/ChangeLog b/sci-chemistry/pymol/ChangeLog index 73c419290a91..f5a97ddc2778 100644 --- a/sci-chemistry/pymol/ChangeLog +++ b/sci-chemistry/pymol/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-chemistry/pymol # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.108 2014/01/26 09:21:14 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.109 2014/03/10 07:08:07 jlec Exp $ + +*pymol-1.7.0.4 (10 Mar 2014) + + 10 Mar 2014; Justin Lecher <jlec@gentoo.org> +pymol-1.7.0.4.ebuild: + Version Bump 26 Jan 2014; Justin Lecher <jlec@gentoo.org> ChangeLog: Update HOMEPAGE diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest index 883b81424457..3c655f1c5559 100644 --- a/sci-chemistry/pymol/Manifest +++ b/sci-chemistry/pymol/Manifest @@ -16,6 +16,7 @@ DIST pymol-1.5.0.3.tar.xz 7412080 SHA256 b304c2839bc944bd2619403474d36cb846b372b DIST pymol-1.6.0_rc1.tar.xz 6592108 SHA256 7353c9bdfa272b516bd43efaea7df16a6e1632b013ac6091eb5ec34b1f8676bc SHA512 971f03b41db1ed6b1095e91cea49ca5ffb819bf9b97e34dab215112462da02d7bb1b608c462d07556998dfd49631663f3d2cbf27368980f3d69bf134002224a8 WHIRLPOOL 2368fb3a20cbb2d490b1f4b370f770aa7b89921c5827414715ec7616ad66e991bb7f378ed7c379db78b9391dea0bcae9d56362bd705978d667858af8ef46ebb4 DIST pymol-1.7.0.0.png.xz 5392 SHA256 4c554a5c4f47946b6f7bae00209d5116305162534292735d30ae0794c56a8a0b SHA512 24bb1584b28688f5d5824e938f8500ca9887838adf490b4284c52f8c0da4c5ec4a56051ee80f48e4f34541ab53f9a4e00c849c382f1fd37c232fbea12d700105 WHIRLPOOL 395f978eb9ea3a8f8f39bf0694f71986ac9f8ebb307b90283c53fed85c4412d84e54af472f8646fcbd99c650039cb395a8f02b281168802c73ddb9bad175512b DIST pymol-1.7.0.1.tar.xz 6550492 SHA256 e8c6f6a465aec78171daf5cd981ebd1614dfa5e014e13c85a044cfbb591841c8 SHA512 a09277cd827f832c4f4e307f6117613d2ee8250643d129a5c34a30ceab2bfe8cea195c71a138fff09b6c69e9427153b917d7d3a7262d154ada5f323ec9635087 WHIRLPOOL 1803b55ade1b04de5963fd4a3bbe1354cda8759e15254c644952e25d7dcc904bc7b9fd91da75fdb8c6a96fd118a5a21bec9c8bba368744b44436747faca5cd9c +DIST pymol-1.7.0.4.tar.xz 6565436 SHA256 29ff657ae45c733931473a49f88add8bb760e31ddcf03738bba82fdbb3b875ff SHA512 1033e3d8da59c71849f7e7fad89f090fd5015469ba7ff00460b07d73c4a6640fa7edccc748b68ccf1f26e1d94bc8d26c6004f8c2a0481403f79a77e7028a6d6c WHIRLPOOL 2c978cb47944e148b6bc4bea3b96168de624c279bc4ae59c437b7f14a3448ca600dbda77f3ef3f3533a487b8c52b3478314b60044f99dd5229f6576d6e46a438 DIST pymol-icons.tar.xz 38100 SHA256 03500f28256f67abfbb7d08b798b11aaa208f0ae1473ef2a7205b3c012ddb06a SHA512 5af51014d4fcbc85ef1fecd7667224709c9305b9b72bfdfd89ece2b4420fa8a81bf8c85fcc5903e2a670f44403f12764808f6a16ef42f111bbd0e7ed8e412d54 WHIRLPOOL 6104d378928c56b39f8cbe29184629b73f87da09e81e41ddc08b9b291876f1a30ccaf9ec257f47798c6d03253816f80c14567073c419fa48dd1520fa3fa58ecd DIST pymol-v1.6.0.0.tar.bz2 8695114 SHA256 a37eb1a1bd882da14ac9c03617f62f6a49eea5a6dacd0d7202fb3b7cba84e62b SHA512 afe4a9e9c9501b3e636ca97eac3e4204da2cbafd7dc85ad6fd43227c68b448de435f190eea9c75b3403f11786bc512b6366bdf092c591432440032ddc018b0b2 WHIRLPOOL 30302badde84ad63e4a402a54046da63812051879bdb707782589b4bfaa09a8f590e58b5bdd89d0deefd9d2127f17406dd862f36f6a0e33e3e410f8a9d47a937 DIST pymol-v1.7.0.0.tar.bz2 8775358 SHA256 f4c1b6f0dfc9b1b8419d92e39d436d4ea3462bdfcd17df1025877379bf647a4d SHA512 f5a1dc255aefe14f1cbb716687af959a53757bb77d9858650ea8b021f34bf9f2a48ac04fbfe40f67fe0219def5cfea1e30d78f50fd68930c5bbd4983ea58d8ac WHIRLPOOL c0a4b7f93a4140af44d5b3aa0824426482e65f5dc7c6a598435388ac3dc912ad220dc38a619165b921cedb131069d02a41bbcda8ce218dc3f8c052a3dc7a022f @@ -27,22 +28,25 @@ EBUILD pymol-1.6.0.0.ebuild 2329 SHA256 72013c55e9e223c76a4643a8b423292b43e2e9e9 EBUILD pymol-1.6.0_rc1.ebuild 2262 SHA256 468f978ce8800b1db5c55274c912bd67000715454762007286d3c0c1c36dbf24 SHA512 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versionator + +DESCRIPTION="A Python-extensible molecular graphics system" +HOMEPAGE="http://www.pymol.org/" +SRC_URI=" + http://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz + http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz +" +# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 + +LICENSE="PSF-2.2" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" +IUSE="apbs web" + +DEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pmw[${PYTHON_USEDEP}] + dev-python/pyopengl[${PYTHON_USEDEP}] + media-libs/freetype:2 + media-libs/glew + media-libs/libpng + media-video/mpeg-tools + sys-libs/zlib + media-libs/freeglut + apbs? ( + dev-libs/maloc + sci-chemistry/apbs + sci-chemistry/pdb2pqr + sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] + ) + web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/${P}/${PN} + +python_prepare_all() { + sed \ + -e "s:\"/usr:\"${EPREFIX}/usr:g" \ + -e "/ext_comp_args/s:=\[.*\]$:= \[\]:g" \ + -e "/import/s:argparse:argparseX:g" \ + -i setup.py || die + + rm ./modules/pmg_tk/startup/apbs_tools.py || die + + sed \ + -e "s:/opt/local:${EPREFIX}/usr:g" \ + -e '/ext_comp_args/s:\[.*\]:[]:g' \ + -i setup.py || die + + distutils-r1_python_prepare_all +} + +python_install() { + distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" +} + +python_install_all() { + distutils-r1_python_install_all + + python_export python2_7 EPYTHON + + # These environment variables should not go in the wrapper script, or else + # it will be impossible to use the PyMOL libraries from Python. + cat >> "${T}"/20pymol <<- EOF + PYMOL_PATH="$(python_get_sitedir)/${PN}" + PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" + PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" + EOF + + doenvd "${T}"/20pymol + + newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png + make_desktop_entry pymol PyMol ${PN} "Graphics;Education;Science;Chemistry" "MimeType=chemical/x-pdb;" + + if ! use web; then + rm -rf "${D}/$(python_get_sitedir)/web" || die + fi + + rm -f "${ED}"/usr/share/${PN}/LICENSE || die +} + +pkg_postinst() { + fdo-mime_desktop_database_update + fdo-mime_mime_database_update +} + +pkg_postrm() { + fdo-mime_desktop_database_update + fdo-mime_mime_database_update +} |