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path: root/sci-biology/biopython
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* sci-biology/biopython: sys-devel/flex -> app-alternatives/lexSam James2024-01-081-2/+2
| | | | | | | | | | All of these will be using app-alternatives/lex anyway as they're not unsetting YACC or LEX, so make the dep reflect reality. (Included both YACC and LEX out of conservatism.) Signed-off-by: Sam James <sam@gentoo.org>
* sci-biology/biopython: drop 1.81David Seifert2023-07-301-61/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: use PEP517 buildPacho Ramos2023-07-213-0/+99
| | | | | | | Also apply Fedora patches to get ready for newer reportlab and python3.12 Closes: https://bugs.gentoo.org/910016 Signed-off-by: Pacho Ramos <pacho@gentoo.org>
* sci-biology/biopython: drop 1.79David Seifert2023-04-162-63/+0
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: add 1.81Andrew Ammerlaan2023-02-242-0/+62
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: remove py3.8 from PYTHON_COMPATDavid Seifert2023-01-141-2/+2
| | | | Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: Use slot for dev-python/psycopgMichał Górny2022-06-041-2/+2
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/biopython: drop 1.77David Seifert2021-12-302-62/+0
| | | | | | Closes: https://bugs.gentoo.org/757867 Closes: https://bugs.gentoo.org/780345 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: add 1.79David Seifert2021-12-202-0/+63
| | | | | | Bug: https://bugs.gentoo.org/757867 Bug: https://bugs.gentoo.org/780345 Signed-off-by: David Seifert <soap@gentoo.org>
* **/metadata.xml: Replace http by https in DOCTYPE elementUlrich Müller2021-09-111-1/+1
| | | | | Bug: https://bugs.gentoo.org/552720 Signed-off-by: Ulrich Müller <ulm@gentoo.org>
* sci-biology/biopython: Use optfeature_header() instead of custom elogAndreas Sturmlechner2021-04-041-6/+5
| | | | Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* */*: Remove obsolete values from PYTHON_COMPATMichał Górny2021-01-311-1/+1
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* */*: Update pypi (and github) remote-ids from HOMEPAGEMichał Górny2020-12-111-4/+7
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/biopython: Inherit optfeature.eclassDavid Seifert2020-09-071-1/+1
| | | | | Package-Manager: Portage-3.0.5, Repoman-3.0.1 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: Remove old 1.73David Seifert2020-08-222-58/+0
| | | | | Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: Version bump to 1.77David Seifert2020-08-222-0/+63
| | | | | Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: David Seifert <soap@gentoo.org>
* */*: Clean PYTHON_COMPAT of obsolete implsMichał Górny2020-01-051-2/+2
| | | | | Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/biopython: Drop python2_7Andreas Sturmlechner2019-12-291-2/+1
| | | | | Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
* sci-biology/biopython: Remove oldDavid Seifert2019-12-293-114/+0
| | | | | Package-Manager: Portage-2.3.83, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
* sci-biology/biopython: Bump to version 1.73David Seifert2019-04-212-0/+59
| | | | | Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org>
* */*: Remove python3_4 PYTHON_COMPAT correctlyMichał Górny2019-04-172-4/+4
| | | | Signed-off-by: Michał Górny <mgorny@gentoo.org>
* sci-biology/biopython: x86 stable (bug #659292)Thomas Deutschmann2018-07-021-1/+1
| | | | Package-Manager: Portage-2.3.40, Repoman-2.3.9
* sci-biology/biopython: amd64 stable, bug #659292Pacho Ramos2018-07-011-1/+1
| | | | Package-Manager: Portage-2.3.41, Repoman-2.3.9
* sci-biology/biopython: Bump to 1.71David Seifert2018-05-272-0/+58
| | | | | Closes: https://bugs.gentoo.org/653006 Package-Manager: Portage-2.3.40, Repoman-2.3.9
* Replace pypi.python.org with pypi.org in HOMEPAGEMike Gilbert2018-04-191-1/+1
| | | | Bug: https://bugs.gentoo.org/653540
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-1/+1
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* media-gfx/pydot: move to dev-python/pydotTim Harder2017-08-191-1/+1
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* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-281-1/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/biopython: Remove ppc from KEYWORDSDavid Seifert2017-02-021-1/+1
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3766
* sci-biology/biopython: Drop oldJustin Lecher2017-01-024-154/+0
| | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/biopython: x86 stable wrt bug #584210Agostino Sarubbo2017-01-021-1/+1
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/biopython: ppc stable wrt bug #584210Agostino Sarubbo2017-01-011-2/+2
| | | | | | Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* global: Drop dead implementations from PYTHON_COMPATMichał Górny2016-11-013-3/+3
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* sci-biology/biopython: amd64 stable wrt bug #584210Agostino Sarubbo2016-09-261-1/+1
| | | | | | Package-Manager: portage-2.2.28 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/biopython: Version bumpDavid Seifert2016-09-032-0/+57
| | | | Package-Manager: portage-2.3.0
* sci-biology/biopython: Add python3_5 supportDavid Seifert2016-03-271-2/+2
| | | | Package-Manager: portage-2.2.28
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* sci-biology/biopython: Version BumpJustin Lecher2015-10-262-0/+57
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-084-0/+102
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed