New upstream version. Added test cases.

(Portage version: 2.1.1)

3 files changed, 58 insertions, 1 deletions

diff --git a/sci-biology/bioperl-run/ChangeLog b/sci-biology/bioperl-run/ChangeLog
index dd75ad894dd2..2cd64757fdb3 100644
--- a/sci-biology/bioperl-run/ChangeLog
+++ b/sci-biology/bioperl-run/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/bioperl-run
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.8 2006/02/13 15:08:18 mcummings Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/ChangeLog,v 1.9 2006/09/13 01:43:55 ribosome Exp $
+
+*bioperl-run-1.5.1 (13 Sep 2006)
+
+  13 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+  +bioperl-run-1.5.1.ebuild:
+  New upstream version. Added test cases.
 
   13 Feb 2006; Michael Cummings <mcummings@gentoo.org>
   bioperl-run-1.4.ebuild:
diff --git a/sci-biology/bioperl-run/bioperl-run-1.5.1.ebuild b/sci-biology/bioperl-run/bioperl-run-1.5.1.ebuild
new file mode 100644
index 000000000000..83f49d75d2a6
--- /dev/null
+++ b/sci-biology/bioperl-run/bioperl-run-1.5.1.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl-run/bioperl-run-1.5.1.ebuild,v 1.1 2006/09/13 01:43:55 ribosome Exp $
+
+inherit perl-app eutils
+
+DESCRIPTION="A collection of tools for bioinformatics, genomics and life science research: subset required to run analyses"
+HOMEPAGE="http://www.bioperl.org/"
+#SRC_URI="http://www.cpan.org/modules/by-module/Bio/${P}.tar.gz"
+SRC_URI="http://www.bioperl.org/ftp/DIST/${P}.tar.gz"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="x86 ~ppc"
+IUSE=""
+
+RDEPEND="
+	dev-perl/Algorithm-Diff
+	virtual/perl-File-Temp
+	dev-perl/IO-String
+	dev-perl/XML-Parser"
+
+DEPEND=""
+
+src_compile() {
+	perl-module_src_compile || die "compile failed"
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS INSTALL.PROGRAMS README"
+	perl-module_src_install
+
+	# bioperl scripts and examples
+	einfo 'Adding bioperl examples and scripts to /usr/share/...'
+	dodir /usr/share/${PF}/scripts
+	#insinto /usr/share/${PF}/scripts
+	cd "${S}"/scripts/
+	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/scripts; tar xf -)
+	dodir /usr/share/${PF}/examples
+	cd "${S}"/examples/
+	tar cf - ./ | ( cd "${D}"/usr/share/${PF}/examples; tar xf -)
+	cd "${S}"
+}
+
+src_test() {
+	make test
+	perl-module_src_test || die "src test failed"
+}
diff --git a/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1 b/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1
new file mode 100644
index 000000000000..6e98b580335f
--- /dev/null
+++ b/sci-biology/bioperl-run/files/digest-bioperl-run-1.5.1
@@ -0,0 +1,3 @@
+MD5 dbfce41fa5d86dab5fd1d6af4196c646 bioperl-run-1.5.1.tar.gz 864369
+RMD160 841e33cffda7b787b1700a075bf985c717d7e678 bioperl-run-1.5.1.tar.gz 864369
+SHA256 d9e1f5bdff5541376cab1c8b7e8db9bedbbb7b6f76b965d55dc20122a98f93e8 bioperl-run-1.5.1.tar.gz 864369