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| author |   Kacper Kowalik <xarthisius@gentoo.org> | 2010-06-20 16:55:14 +0000 |
|---|---|---|
| committer | Kacper Kowalik <xarthisius@gentoo.org> | 2010-06-20 16:55:14 +0000 |
| commit | c064f85b1ee5c44c975474e6f9ac5dab91078607 (patch) | |
| tree | 0a8dc371438e94584ea386578b997b42b25aa9d0 /sci-biology/blossoc | |
| parent | Use proper security terms. (diff) | |
| download | gentoo-2-c064f85b1ee5c44c975474e6f9ac5dab91078607.tar.gz gentoo-2-c064f85b1ee5c44c975474e6f9ac5dab91078607.tar.bz2 gentoo-2-c064f85b1ee5c44c975474e6f9ac5dab91078607.zip | |
Fixing build with gcc-4.3. Thanks Sebastian Luther <SebastianLuther@gmx.de> for report and patch
(Portage version: 2.1.8.3/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/blossoc')
| -rw-r--r-- | sci-biology/blossoc/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/blossoc/blossoc-1.4.0.ebuild | 7 | ||||
| -rw-r--r-- | sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch | 15 |
3 files changed, 26 insertions, 5 deletions
diff --git a/sci-biology/blossoc/ChangeLog b/sci-biology/blossoc/ChangeLog index d97265a52b2e..5be8ff808687 100644 --- a/sci-biology/blossoc/ChangeLog +++ b/sci-biology/blossoc/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/blossoc -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ + + 20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> blossoc-1.4.0.ebuild, + +files/blossoc-1.4.0-gcc43.patch: + Fixing build with gcc-4.3. Thanks Sebastian Luther + <SebastianLuther@gmx.de> for report and patch 25 May 2009; Markus Meier <maekke@gentoo.org> blossoc-1.4.0.ebuild: amd64/x86 stable, bug #269969 diff --git a/sci-biology/blossoc/blossoc-1.4.0.ebuild b/sci-biology/blossoc/blossoc-1.4.0.ebuild index 00439ae28961..833c79d571b1 100644 --- a/sci-biology/blossoc/blossoc-1.4.0.ebuild +++ b/sci-biology/blossoc/blossoc-1.4.0.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ EAPI="2" -inherit autotools +inherit autotools eutils DESCRIPTION="A linkage disequilibrium association mapping tool" HOMEPAGE="http://www.daimi.au.dk/~mailund/Blossoc/" @@ -22,6 +22,7 @@ RDEPEND="${DEPEND}" src_prepare() { sed -i '/TESTS += first_test.sh/ d' "${S}/Makefile.am" || die + epatch "${FILESDIR}"/${P}-gcc43.patch eautoreconf } diff --git a/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch new file mode 100644 index 000000000000..d8e354c1745f --- /dev/null +++ b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch @@ -0,0 +1,15 @@ +Fixes build with >=GCC-4.3 + +http://bugs.gentoo.org/show_bug.cgi?id=292949 + +Patch written by Sebastian Luther <SebastianLuther@gmx.de> +--- pph.cc ++++ pph.cc +@@ -23,6 +23,7 @@ + */ + + #include "pph.hh" ++#include <cstdio> + #include <cmath> + #include <snpfile/matrix.hh> + using namespace BiRC::SNPFile; |