sci-biology/primer3: Version BUmp

(Portage version: 2.2.0_alpha120/cvs/Linux x86_64)

3 files changed, 62 insertions, 10 deletions

diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index 50f2be8512de..c8a7df6ca87e 100644
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/primer3
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.31 2012/03/07 19:40:07 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.32 2012/07/19 12:21:52 jlec Exp $
+
+*primer3-2.3.1 (19 Jul 2012)
+
+  19 Jul 2012; Justin Lecher <jlec@gentoo.org> primer3-2.3.0.ebuild,
+  +primer3-2.3.1.ebuild:
+  Version BUmp
 
   07 Mar 2012; Brent Baude <ranger@gentoo.org> primer3-2.3.0.ebuild:
   Marking primer3-2.3.0 ppc for bug 402053
diff --git a/sci-biology/primer3/primer3-2.3.0.ebuild b/sci-biology/primer3/primer3-2.3.0.ebuild
index 1306d12212e5..40778dce474a 100644
--- a/sci-biology/primer3/primer3-2.3.0.ebuild
+++ b/sci-biology/primer3/primer3-2.3.0.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.2 2012/03/07 19:40:07 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.3 2012/07/19 12:21:52 jlec Exp $
 
-EAPI="3"
+EAPI=4
 
 inherit toolchain-funcs
 
@@ -31,18 +31,17 @@ src_prepare() {
 }
 
 src_compile() {
-	emake -C src || die
+	emake -C src
 }
 
 src_test () {
-	emake -C test || die
+	emake -C test
 }
 
 src_install () {
-	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} || die \
-		"Could not install program."
-	dodoc src/release_notes.txt example primer3_manual.htm || die \
-		"Could not install documentation."
+	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core}
+	dodoc src/release_notes.txt example
 	insinto /opt/primer3_config
-	doins -r src/primer3_config/* primer3*settings.txt || die
+	doins -r src/primer3_config/* primer3*settings.txt
+	dohtml primer3_manual.htm
 }
diff --git a/sci-biology/primer3/primer3-2.3.1.ebuild b/sci-biology/primer3/primer3-2.3.1.ebuild
new file mode 100644
index 000000000000..c42182fb1bbe
--- /dev/null
+++ b/sci-biology/primer3/primer3-2.3.1.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.1.ebuild,v 1.1 2012/07/19 12:21:52 jlec Exp $
+
+EAPI=4
+
+inherit toolchain-funcs
+
+DESCRIPTION="Primer Design for PCR reactions"
+HOMEPAGE="http://primer3.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+SLOT="0"
+LICENSE="GPL-2"
+IUSE=""
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
+
+DEPEND="dev-lang/perl"
+RDEPEND=""
+
+src_prepare() {
+	if [[ ${CHOST} == *-darwin* ]]; then
+		sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die
+	fi
+	perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
+	sed \
+		-e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
+		-e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
+		-e 's:CFLAGS:CXXFLAGS:g' \
+		-i src/Makefile || die
+}
+
+src_compile() {
+	emake -C src
+}
+
+src_test () {
+	emake -C test
+}
+
+src_install () {
+	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core}
+	dodoc src/release_notes.txt example
+	insinto /opt/primer3_config
+	doins -r src/primer3_config/* primer3*settings.txt
+	dohtml primer3_manual.htm
+}