sci-biology/bowtie: Drop old

(Portage version: 2.2.0_alpha196/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

4 files changed, 5 insertions, 109 deletions

diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog
index 77ad1374cccd..efbaedea431d 100644
--- a/sci-biology/bowtie/ChangeLog
+++ b/sci-biology/bowtie/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bowtie
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.18 2013/07/27 22:19:25 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.19 2013/08/11 13:32:35 jlec Exp $
+
+  11 Aug 2013; Justin Lecher <jlec@gentoo.org> -bowtie-0.12.3.ebuild,
+  -bowtie-0.12.5.ebuild, -bowtie-0.12.7.ebuild:
+  Drop old
 
   27 Jul 2013; Agostino Sarubbo <ago@gentoo.org> bowtie-0.12.8.ebuild:
   Stable for x86, wrt bug #477134
diff --git a/sci-biology/bowtie/bowtie-0.12.3.ebuild b/sci-biology/bowtie/bowtie-0.12.3.ebuild
deleted file mode 100644
index 1bc1efeff004..000000000000
--- a/sci-biology/bowtie/bowtie-0.12.3.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.3 2010/07/16 17:22:29 hwoarang Exp $
-
-EAPI="2"
-
-DESCRIPTION="An ultrafast memory-efficient short read aligner"
-HOMEPAGE="http://bowtie-bio.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 x86"
-
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
-# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
-# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
-
-src_prepare() {
-	sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
-}
-
-src_install() {
-	dobin bowtie bowtie-* || die
-	exeinto /usr/share/${PN}/scripts
-	doexe scripts/* || die
-	newman MANUAL bowtie.1
-	dodoc AUTHORS NEWS TUTORIAL
-}
diff --git a/sci-biology/bowtie/bowtie-0.12.5.ebuild b/sci-biology/bowtie/bowtie-0.12.5.ebuild
deleted file mode 100644
index 28540c3e52de..000000000000
--- a/sci-biology/bowtie/bowtie-0.12.5.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.5.ebuild,v 1.2 2010/09/30 07:24:16 grobian Exp $
-
-EAPI="2"
-
-DESCRIPTION="An ultrafast memory-efficient short read aligner"
-HOMEPAGE="http://bowtie-bio.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
-
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
-# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
-# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
-
-src_prepare() {
-	sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
-}
-
-src_install() {
-	dobin bowtie bowtie-* || die
-	exeinto /usr/share/${PN}/scripts
-	doexe scripts/* || die
-	newman MANUAL bowtie.1
-	dodoc AUTHORS NEWS TUTORIAL
-}
diff --git a/sci-biology/bowtie/bowtie-0.12.7.ebuild b/sci-biology/bowtie/bowtie-0.12.7.ebuild
deleted file mode 100644
index f4dd3c11bde5..000000000000
--- a/sci-biology/bowtie/bowtie-0.12.7.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.7.ebuild,v 1.1 2011/03/06 17:18:05 jlec Exp $
-
-EAPI="4"
-
-inherit toolchain-funcs
-
-DESCRIPTION="An ultrafast memory-efficient short read aligner"
-HOMEPAGE="http://bowtie-bio.sourceforge.net/"
-SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
-
-LICENSE="Artistic"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86 ~x64-macos"
-
-DEPEND="app-arch/unzip"
-RDEPEND=""
-
-# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
-# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
-
-#src_prepare() {
-#	sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
-#}
-
-src_compile() {
-	unset CFLAGS
-	emake \
-		CC="$(tc-getCC)" \
-		CPP="$(tc-getCXX)" \
-		CXX="$(tc-getCXX)" \
-		EXTRA_FLAGS="${LDFLAGS}" \
-		RELEASE_FLAGS=""
-}
-
-src_install() {
-	dobin bowtie bowtie-* || die
-	exeinto /usr/share/${PN}/scripts
-	doexe scripts/* || die
-	newman MANUAL bowtie.1
-	dodoc AUTHORS NEWS TUTORIAL
-}