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| author |   Jeffrey Gardner <je_fro@gentoo.org> | 2008-02-03 04:38:00 +0000 |
|---|---|---|
| committer | Jeffrey Gardner <je_fro@gentoo.org> | 2008-02-03 04:38:00 +0000 |
| commit | ca1071805a01be3dd3c352ee8fd445640a11e7c8 (patch) | |
| tree | e34e31be30fed88520a51f468458fa9f9ad0ff98 /sci-biology | |
| parent | Fixing repoman minor syntax error (diff) | |
| download | gentoo-2-ca1071805a01be3dd3c352ee8fd445640a11e7c8.tar.gz gentoo-2-ca1071805a01be3dd3c352ee8fd445640a11e7c8.tar.bz2 gentoo-2-ca1071805a01be3dd3c352ee8fd445640a11e7c8.zip | |
sci-biology/generic-genome-browser moved to the science overlay for resuscitation. Failing that, removal. See bug #153325.
Diffstat (limited to 'sci-biology')
4 files changed, 0 insertions, 137 deletions
diff --git a/sci-biology/generic-genome-browser/ChangeLog b/sci-biology/generic-genome-browser/ChangeLog deleted file mode 100644 index c23f8b8ccf9d..000000000000 --- a/sci-biology/generic-genome-browser/ChangeLog +++ /dev/null @@ -1,51 +0,0 @@ -# ChangeLog for sci-biology/generic-genome-browser -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $ - - 29 Jul 2007; Christian Heim <phreak@gentoo.org> - generic-genome-browser-1.58.ebuild: - Fixing the DEPEND/RDEPEND for the move of net-www/apache to - www-servers/apache (#78622). - - 23 Nov 2006; Francesco Riosa <vivo@gentoo.org> - generic-genome-browser-1.58.ebuild: - dev-db/mysql => virtual/mysql - - 14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml: - Stepping down from maintaining this package. - - 13 Feb 2006; Michael Cummings <mcummings@gentoo.org> - generic-genome-browser-1.58.ebuild: - Virtuals for some perl-core deps - - 28 Nov 2005; <mcumming@gentoo.org> generic-genome-browser-1.58.ebuild: - Switched from perl-module to perl-app eclass - - 19 Sep 2005; Olivier Fisette <ribosome@gentoo.org> metadata.xml: - Maintainer changed from Stephen Diener (MIA) to Olivier Fisette. - - 24 May 2005; Michael Cummings <mcummings@gentoo.org> - generic-genome-browser-1.58.ebuild: - dev-perl/Digest-MD5 => perl-core/Digest-MD5 - - 24 May 2005; Michael Cummings <mcummings@gentoo.org> - generic-genome-browser-1.58.ebuild: - dev-perl/CGI => perl-core/CGI - -*generic-genome-browser-1.58 (23 Dec 2004) - - 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, - +generic-genome-browser-1.58.ebuild: - Moved from app-sci/generic-genome-browser to - sci-biology/generic-genome-browser. - - 03 Aug 2004; David Holm <dholm@gentoo.org> - generic-genome-browser-1.58.ebuild: - Added to ~ppc. - -*generic-genome-browser-1.58 (13 Jan 2004) - - 13 Jan 2004; Stephen Diener <sediener@gentoo.org> - generic-genome-browser-1.58.ebuild: - Initial import - diff --git a/sci-biology/generic-genome-browser/Manifest b/sci-biology/generic-genome-browser/Manifest deleted file mode 100644 index 9226e4f28db0..000000000000 --- a/sci-biology/generic-genome-browser/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -DIST Generic-Genome-Browser-1.58.tar.gz 1207583 RMD160 fff1a264eaab913033fc87718ccc8d9c8e26588b SHA1 2e8b0899fcef8c0275fcb97d62f37ca8e189ec28 SHA256 f49a6c3efca44652c84d9433fd810ad876021475c5b0dffd604448fe91a4bfa8 -EBUILD generic-genome-browser-1.58.ebuild 2036 RMD160 366d728342b8c87f33d61814b4c1b94254af65bf SHA1 a3a73b6631b691ed02e3f6d21146566ffd52f0f8 SHA256 b348315e82b01abe59b552df8d58e5bf2bcb051edb4117630d7841e55600ecb2 -MISC ChangeLog 1800 RMD160 945635f595dee6335828affd4d042c173e570cf3 SHA1 419375011a04db77048ac39dfdaffc613dfdcb86 SHA256 a59e36913cf1616e2e125dfa1a5e0f2c5140a61e3701bf0e80107298053f5f9d -MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 diff --git a/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild b/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild deleted file mode 100644 index 0a5ffdb59bb9..000000000000 --- a/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild +++ /dev/null @@ -1,77 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/generic-genome-browser-1.58.ebuild,v 1.9 2007/07/29 17:07:38 phreak Exp $ - -inherit perl-app - -MY_PN="Generic-Genome-Browser" -MY_P="${MY_PN}-${PV}" - -DESCRIPTION="The generic genome browser provides a display of genomic annotations on interactive web pages" -HOMEPAGE="http://www.gmod.org" -SRC_URI="mirror://sourceforge/gmod/${MY_P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~x86 ~ppc" -IUSE="mysql gd" - -S="${WORKDIR}/${MY_P}" - -DEPEND=" - >=sci-biology/bioperl-1.4 - >=virtual/perl-CGI-2.56 - >=dev-perl/GD-2.07 - dev-perl/DBI - virtual/perl-Digest-MD5 - dev-perl/Text-Shellwords - dev-perl/libwww-perl - dev-perl/XML-Parser - dev-perl/XML-Writer - dev-perl/XML-Twig - dev-perl/XML-DOM - dev-perl/Bio-Das - gd? ( - dev-perl/GD-SVG - ) - mysql? - ( - >=virtual/mysql-4.0 - dev-perl/DBD-mysql - ) - >=www-servers/apache-2.0.47" - -RDEPEND="${DEPEND}" - -src_compile() { - - cd ${S} -# ewarn "Modifying Makefile.PL to avoid sandbox violation" - sed -e "s:WriteMakefile(:WriteMakefile(\n 'PREFIX'=>'${D}/usr',\n'INSTALLDIRS' => 'vendor',:" -i Makefile.PL - - perl Makefile.PL \ - HTDOCS=/var/www/localhost/htdocs \ - CGIBIN=/var/www/localhost/cgi-bin \ - CONF=/etc \ - PREFIX=/var/www/localhost \ - DESTDIR=${D} \ - INSTALLDIRS=vendor - #perl-module_src_compile || die "Make failed" - perl-module_src_test || die "Test Failed" -} - -src_install() { - dodir /etc - dodir /var/www/localhost/htdocs - dodir /var/www/localhost/cgi-bin - mydoc="History README TODO INSTALL" - dodir /usr/share/${PF}/tutorial - cd ${S}/docs/tutorial - tar cf - ./ | ( cd ${D}/usr/share/${PF}/scripts; tar xf -) - cd ${S} - sed -e "s:my \$dir = \":my \$dir = \"${D}/:" -i install_util/conf_install.PLS - sed -e "s:my \$ht_target = \":my \$ht_target = \"${D}/:" -i install_util/htdocs_install.PLS - sed -e "s:my \$cgi_target = :my \$cgi_target = \"${D}\"\.:" -i install_util/cgi_install.PLS - - perl-module_src_install -} diff --git a/sci-biology/generic-genome-browser/metadata.xml b/sci-biology/generic-genome-browser/metadata.xml deleted file mode 100644 index d4648212cbad..000000000000 --- a/sci-biology/generic-genome-browser/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <herd>sci-biology</herd> -</pkgmetadata> |