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authorOlivier Fisette <ribosome@gentoo.org>2005-06-03 05:04:34 +0000
committerOlivier Fisette <ribosome@gentoo.org>2005-06-03 05:04:34 +0000
commitd09bb5b39de09c34ee684f549a8ec40b7ae56ac4 (patch)
treeea57a96f8502b21195d09118e6561b39d3a83ba5 /sci-biology
parentheader fix (diff)
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gentoo-2-d09bb5b39de09c34ee684f549a8ec40b7ae56ac4.tar.bz2
gentoo-2-d09bb5b39de09c34ee684f549a8ec40b7ae56ac4.zip
New version. Added 505 to x86.
(Portage version: 2.0.51.19)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog8
-rw-r--r--sci-biology/rebase/Manifest10
-rw-r--r--sci-biology/rebase/files/digest-rebase-5061
-rw-r--r--sci-biology/rebase/rebase-505.ebuild4
-rw-r--r--sci-biology/rebase/rebase-506.ebuild39
5 files changed, 55 insertions, 7 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 5a96dfd0a1f0..fc9719906aac 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/rebase
# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.19 2005/05/31 02:39:40 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.20 2005/06/03 05:04:34 ribosome Exp $
+
+*rebase-506 (03 Jun 2005)
+
+ 03 Jun 2005; Olivier Fisette <ribosome@gentoo.org> rebase-505.ebuild,
+ +rebase-506.ebuild:
+ New version. Added 505 to x86.
31 May 2005; Lina Pezzella <j4rg0n@gentoo.org> rebase-504.ebuild:
Stable ppc-macos
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index d06c01b372a0..9fbf601d75d9 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,8 +1,10 @@
-MD5 226073d1437f64cda871a6263ee6f363 ChangeLog 3697
-MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
+MD5 535c1b9a5c039afe12e7c27585f2fd49 rebase-506.ebuild 1105
MD5 5fa95c2f2ad17343c0eb4b6ca755f356 rebase-503.ebuild 1093
+MD5 e480c248b0cb632352c8390be3847b01 rebase-505.ebuild 1104
MD5 09995c6206ec61ffb1b9ab7b1d42b630 rebase-504.ebuild 1101
-MD5 535c1b9a5c039afe12e7c27585f2fd49 rebase-505.ebuild 1105
-MD5 d6f28d28944c2a7a89f538b5e2f6ca59 files/digest-rebase-504 63
+MD5 d5c8e94559f922a45d8a24bd01dea11e ChangeLog 3852
+MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
MD5 4dadc55666a0a297406ac775307bfc29 files/digest-rebase-503 63
+MD5 d6f28d28944c2a7a89f538b5e2f6ca59 files/digest-rebase-504 63
MD5 ea8e6db2f49c76188695eded7e22ea33 files/digest-rebase-505 63
+MD5 9db4b0bbf4fd2bfaf23f3434ac71e8f5 files/digest-rebase-506 63
diff --git a/sci-biology/rebase/files/digest-rebase-506 b/sci-biology/rebase/files/digest-rebase-506
new file mode 100644
index 000000000000..facaa8432676
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-506
@@ -0,0 +1 @@
+MD5 b404ccb65575b61ff3bd555b02fc2647 rebase-506.tar.bz2 179395
diff --git a/sci-biology/rebase/rebase-505.ebuild b/sci-biology/rebase/rebase-505.ebuild
index 331ebaa47b6d..96864a471d63 100644
--- a/sci-biology/rebase/rebase-505.ebuild
+++ b/sci-biology/rebase/rebase-505.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-505.ebuild,v 1.1 2005/05/10 02:00:37 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-505.ebuild,v 1.2 2005/06/03 05:04:34 ribosome Exp $
DESCRIPTION="A restriction enzyme database"
HOMEPAGE="http://rebase.neb.com"
@@ -8,7 +8,7 @@ SRC_URI="mirror://gentoo/${P}.tar.bz2"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+KEYWORDS="x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
IUSE="emboss minimal"
# Minimal build keeps only the indexed files (if applicable) and the documentation.
# The non-indexed database is not installed.
diff --git a/sci-biology/rebase/rebase-506.ebuild b/sci-biology/rebase/rebase-506.ebuild
new file mode 100644
index 000000000000..eb45926e8fbf
--- /dev/null
+++ b/sci-biology/rebase/rebase-506.ebuild
@@ -0,0 +1,39 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-506.ebuild,v 1.1 2005/06/03 05:04:34 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+IUSE="emboss minimal"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
+
+DEPEND="emboss? ( sci-biology/emboss )"
+
+src_compile() {
+ if use emboss; then
+ echo
+ einfo "Indexing ${PN} for usage with EMBOSS."
+ mkdir REBASE
+ EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+ -protofile proto.${PV} || die "Indexing ${PN} failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${PV} proto.${PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
+ fi
+}