Fixes for bug 314053

(Portage version: 2.2_rc67/cvs/Linux x86_64)

2 files changed, 76 insertions, 1 deletions

diff --git a/sci-chemistry/oasis/ChangeLog b/sci-chemistry/oasis/ChangeLog
index da9037166fd1..1b60f3c3da40 100644
--- a/sci-chemistry/oasis/ChangeLog
+++ b/sci-chemistry/oasis/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/oasis
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/oasis/ChangeLog,v 1.4 2010/04/25 11:29:53 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/oasis/ChangeLog,v 1.5 2010/05/22 10:04:30 jlec Exp $
+
+*oasis-4.0-r1 (22 May 2010)
+
+  22 May 2010; Justin Lecher <jlec@gentoo.org> +oasis-4.0-r1.ebuild:
+  Fixes for bug 314053
 
   05 Apr 2010; Justin Lecher <jlec@gentoo.org> oasis-4.0.ebuild:
   Keyworded for ~x86-linux ~amd64-linux, tested by me
diff --git a/sci-chemistry/oasis/oasis-4.0-r1.ebuild b/sci-chemistry/oasis/oasis-4.0-r1.ebuild
new file mode 100644
index 000000000000..36d0c60a3d83
--- /dev/null
+++ b/sci-chemistry/oasis/oasis-4.0-r1.ebuild
@@ -0,0 +1,70 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/oasis/oasis-4.0-r1.ebuild,v 1.1 2010/05/22 10:04:30 jlec Exp $
+
+EAPI="3"
+
+inherit eutils multilib toolchain-funcs
+
+MY_P="${PN}${PV}_Linux"
+
+DESCRIPTION="A direct-method program for SAD/SIR phasing"
+HOMEPAGE="http://cryst.iphy.ac.cn/Project/protein/protein-I.html"
+SRC_URI="http://dev.gentooexperimental.org/~jlec/distfiles/${MY_P}.zip"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="ccp4 oasis"
+IUSE="examples +minimal"
+
+RDEPEND="
+	${RDEPEND}
+	sci-chemistry/ccp4-apps
+	sci-chemistry/pymol
+	sci-libs/mmdb
+	sci-visualization/gnuplot
+	!minimal? (
+		sci-chemistry/solve-resolve-bin
+		sci-chemistry/arp-warp-bin
+	)"
+DEPEND="sci-libs/ccp4-libs"
+
+S="${WORKDIR}"/${MY_P}
+
+src_prepare() {
+	rm bin/{fnp2fp,gnuplot,oasis4-0,seq} || die
+	epatch "${FILESDIR}"/${PV}-makefile.patch
+}
+
+src_compile() {
+	emake \
+		-C src \
+		F77="$(tc-getFC)" \
+		CCP4_LIB="${EPREFIX}/usr/$(get_libdir)" \
+		Linux || die
+}
+
+src_install() {
+	exeinto /usr/libexec/ccp4/bin/
+	doexe src/{${PN},fnp2fp} || die
+	dosym ../libexec/ccp4/bin/${PN} /usr/bin/${PN}
+	dosym ../libexec/ccp4/bin/fnp2fp /usr/bin/fnp2fp
+
+	exeinto /usr/$(get_libdir)/${PN}
+	doexe bin/*.*sh || die
+
+	insinto /usr/$(get_libdir)/${PN}/html
+	doins bin/html/* || die
+	chmod 755 "${ED}"/usr/$(get_libdir)/${PN}/html/*.{csh,awk} || die
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r examples || die
+	fi
+
+	cat >> "${T}"/25oasis <<- EOF
+	oasisbin="${EPREFIX}/usr/$(get_libdir)/${PN}"
+	EOF
+
+	doenvd "${T}"/25oasis
+}