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authorJustin Lecher <jlec@gentoo.org>2013-06-02 14:03:03 +0000
committerJustin Lecher <jlec@gentoo.org>2013-06-02 14:03:03 +0000
commite87c0b3d222a96fc688839673089aafe61afd892 (patch)
tree86de4e88bfae118679384400bb5dcad9004e2790 /sci-chemistry/refmac
parentStable for HPPA (bug #470580). (diff)
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sci-chemistry/refmac: Drop obsolete versions
(Portage version: 2.2.0_alpha177/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
Diffstat (limited to 'sci-chemistry/refmac')
-rw-r--r--sci-chemistry/refmac/ChangeLog5
-rw-r--r--sci-chemistry/refmac/refmac-5.6.0119.ebuild86
2 files changed, 4 insertions, 87 deletions
diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 6b6311c81e4c..a533f61d6b84 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/refmac
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.57 2013/02/27 14:40:04 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.58 2013/06/02 14:03:03 jlec Exp $
+
+ 02 Jun 2013; Justin Lecher <jlec@gentoo.org> -refmac-5.6.0119.ebuild:
+ Drop obsolete versions
27 Feb 2013; Justin Lecher <jlec@gentoo.org> refmac-5.5.0110-r3.ebuild,
refmac-5.6.0119.ebuild:
diff --git a/sci-chemistry/refmac/refmac-5.6.0119.ebuild b/sci-chemistry/refmac/refmac-5.6.0119.ebuild
deleted file mode 100644
index 6461102c30ae..000000000000
--- a/sci-chemistry/refmac/refmac-5.6.0119.ebuild
+++ /dev/null
@@ -1,86 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0119.ebuild,v 1.4 2013/02/27 14:40:04 jlec Exp $
-
-EAPI=4
-
-inherit base fortran-2 flag-o-matic toolchain-funcs versionator
-
-MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
-
-DESCRIPTION="Macromolecular crystallographic refinement program"
-HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac"
-SRC_URI="
- ${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz
- test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
-
-SLOT="0"
-LICENSE="ccp4"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-
-RDEPEND="
- !sci-chemistry/makecif
- >=sci-libs/ccp4-libs-6.1.3-r7
- sci-libs/mmdb
- >sci-libs/monomer-db-1
- virtual/blas
- virtual/lapack"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-FORTRAN_STANDARD="77 90"
-
-S="${WORKDIR}"
-
-PATCHES=(
- "${FILESDIR}"/5.6.0116-allow-dynamic-linking.patch
- )
-
-src_prepare() {
- base_src_prepare
- use test && epatch "${FILESDIR}"/5.5-test.log.patch
- [[ ${FC} == *gfortran* ]] && \
- append-fflags -fno-second-underscore && \
- append-cflags -DGFORTRAN -DPROTOTYPE && \
- append-libs -lgfortran -lgfortranbegin -lstdc++
- [[ ${FC} == *ifort* ]] && \
- append-libs -lstdc++
-}
-
-src_compile() {
- emake \
- FC=$(tc-getFC) \
- CC=$(tc-getCC) \
- CXX=$(tc-getCXX) \
- COPTIM="${CFLAGS}" \
- FOPTIM="${FFLAGS:- -O2}" \
- VERSION="" \
- XFFLAGS="-fwhole-file" \
- XCFLAGS="" \
- LLIBCCP="-lccp4f -lccp4c -lccif $($(tc-getPKG_CONFIG) --libs mmdb)" \
- LLIBLAPACK="$($(tc-getPKG_CONFIG) --libs lapack blas)" \
- LLIBOTHERS="${LIBS}"
-}
-
-src_test() {
- einfo "Starting tests ..."
- source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
- export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
- export CCP4_TEST="${WORKDIR}"/test-framework
- export CCP4_SCR="${T}"
- ln -sf refmac "${S}"/refmac5
- sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
- ccp4-run-thorough-tests -v test_refmac5 || die
-}
-
-src_install() {
- for i in refmac libcheck FreeTwin header2matr; do
- exeinto /usr/libexec/ccp4/bin/
- doexe ${i}
- dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
- done
- dosym refmac /usr/bin/refmac5
- dosym refmac /usr/libexec/ccp4/bin/refmac5
- dodoc *.pdf
-}