sci-libs/cctbx: Drop old

(Portage version: 2.2.0_alpha122/cvs/Linux x86_64)

4 files changed, 6 insertions, 590 deletions

diff --git a/sci-libs/cctbx/ChangeLog b/sci-libs/cctbx/ChangeLog
index 82c608a7826b..df36d94bd2c0 100644
--- a/sci-libs/cctbx/ChangeLog
+++ b/sci-libs/cctbx/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/cctbx
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.26 2012/06/19 14:59:00 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.27 2012/08/26 09:55:45 jlec Exp $
+
+  26 Aug 2012; Justin Lecher <jlec@gentoo.org>
+  -cctbx-2010.03.29.2334-r3.ebuild, -cctbx-2010.03.29.2334-r4.ebuild,
+  -cctbx-2010.03.29.2334-r5.ebuild:
+  Drop old
 
   19 Jun 2012; Justin Lecher <jlec@gentoo.org>
   +files/2010.03.29.2334-gcc-4.7.patch, cctbx-2010.03.29.2334-r6.ebuild:
diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334-r3.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334-r3.ebuild
deleted file mode 100644
index 8fe1f61c1aa0..000000000000
--- a/sci-libs/cctbx/cctbx-2010.03.29.2334-r3.ebuild
+++ /dev/null
@@ -1,195 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r3.ebuild,v 1.10 2012/02/10 22:52:33 hwoarang Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils fortran-2 prefix python toolchain-funcs
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Computational Crystallography Toolbox"
-HOMEPAGE="http://cctbx.sourceforge.net/"
-SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
-
-LICENSE="cctbx-2.0"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
-IUSE="+minimal openmp threads"
-
-RDEPEND="
-	virtual/fortran
-	<dev-libs/boost-1.48[python]
-	sci-libs/clipper
-	sci-libs/fftw
-	!minimal? (
-		sci-chemistry/cns
-		sci-chemistry/shelx )"
-DEPEND="${RDEPEND}
-	>=dev-util/scons-1.2"
-
-S="${WORKDIR}"
-MY_S="${WORKDIR}"/cctbx_sources
-MY_B="${WORKDIR}"/cctbx_build
-
-pkg_setup() {
-	use openmp && FORTRAN_NEED_OPENMP="1"
-	fortran-2_pkg_setup
-	if use openmp && ! tc-has-openmp; then
-		ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
-		ewarn "If you want to build ${PN} with OpenMP, abort now,"
-		ewarn "and switch CC to an OpenMP capable compiler"
-	fi
-	python_set_active_version 2
-}
-
-src_prepare() {
-	local opts
-	local optsld
-
-	epatch \
-		"${FILESDIR}"/${PV}-tst_server.py.patch \
-		"${FILESDIR}"/${PV}-boost.patch \
-		"${FILESDIR}"/${PV}-clipper.patch \
-		"${FILESDIR}"/${PV}-flags.patch \
-		"${FILESDIR}"/${PV}-soname.patch
-
-	eprefixify "${MY_S}"/scitbx/libtbx_refresh.py
-
-	rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" || die
-	find "${MY_S}/clipper" -name "*.h" -delete || die
-
-	echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
-}
-
-src_configure() {
-	local compiler
-	local myconf
-
-	myconf="${MY_S}/libtbx/configure.py"
-
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-	myconf="${myconf} --compiler=${compiler}"
-
-	# Additional USE flag usage
-	check_use openmp
-	myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
-
-	use threads && USEthreads="--enable-boost-threads" && \
-		ewarn "If using boost threads openmp support is disabled"
-
-	myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
-
-	mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
-	cd "${MY_B}"
-
-	myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
-	einfo "configuring with ${python} ${myconf}"
-
-	$(PYTHON) ${myconf} || die "configure failed"
-}
-
-src_compile() {
-	local makeopts_exp
-
-	cd "${MY_B}"
-
-	makeopts_exp=${MAKEOPTS/j/j }
-	makeopts_exp=${makeopts_exp%-l[0-9]*}
-
-	source setpaths_all.sh
-
-	einfo "compiling with libtbx.scons ${makeopts_exp}"
-	libtbx.scons ${makeopts_exp} .|| die "make failed"
-}
-
-src_test(){
-	source "${MY_B}"/setpaths_all.sh
-	libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
-	libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
-	libtbx.python ${CCTBX_DIST}/run_tests.py  ${MAKEOPTS_EXP} \
-	|| die "test failed"
-}
-
-src_install(){
-#	find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
-#	sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
-#	    -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g"  \
-#	    -i '{}' \; || die "Fail to correct path"
-
-	sed \
-		-e "s:${MY_B}:${EPREFIX}/usr:g" \
-		-e "s:${MY_S}:${EPREFIX}/$(python_get_sitedir):g" \
-		-i "${MY_B}/libtbx_env" || die
-
-	insinto /usr/share/cctbx
-	doins "${MY_B}/libtbx_env" || die
-
-	ebegin "removing unnessary files"
-		rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
-		find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp"
-		find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type d -empty -delete || die
-		find "${MY_B}" -maxdepth 1 -type f -delete || die
-	eend
-
-	dobin "${MY_B}"/bin/* || die
-	rm -rf "${MY_B}/bin"
-	dolib.so "${MY_B}"/lib/lib* || die
-	rm -f "${MY_B}"/lib/lib*
-
-	insinto /usr/include
-	doins -r "${MY_B}"/include/* || die
-	rm -rf "${MY_B}/include"
-
-	insinto /usr/libexec/${PN}
-	doins -r "${MY_B}"/* || die
-	find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
-
-	cd "${MY_S}"
-	insinto $(python_get_sitedir)
-	doins -r * || die
-	exeinto $(python_get_sitedir)
-	doexe "${MY_B}"/lib/* || die
-	rm -rvf "${MY_B}/lib"
-
-	sed \
-		-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-		-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-		-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-		-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/LIBTBX_BUILD/s:${MY_B}:${EPREFIX}/usr/share/cctbx:g" \
-		-e "s:${MY_B}/exe_dev/:${EPREFIX}/usr/libexec/${PN}/exe_dev/:g" \
-		-i "${ED}"/usr/bin/* || die
-
-}
-
-pkg_postinst () {
-	python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-pkg_postrm () {
-	python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-check_use() {
-	for var in $@; do
-		if use ${var}; then
-			printf -v "USE_$var" True
-		else
-			printf -v "USE_$var" False
-		fi
-	shift
-	done
-}
diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334-r4.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334-r4.ebuild
deleted file mode 100644
index be6aa38cdc99..000000000000
--- a/sci-libs/cctbx/cctbx-2010.03.29.2334-r4.ebuild
+++ /dev/null
@@ -1,196 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r4.ebuild,v 1.5 2012/02/10 22:52:33 hwoarang Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils fortran-2 prefix python toolchain-funcs
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Computational Crystallography Toolbox"
-HOMEPAGE="http://cctbx.sourceforge.net/"
-SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
-
-LICENSE="cctbx-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="+minimal openmp threads"
-
-RDEPEND="
-	virtual/fortran
-	<dev-libs/boost-1.48[python]
-	sci-libs/clipper
-	sci-libs/fftw
-	!minimal? (
-		sci-chemistry/cns
-		sci-chemistry/shelx )"
-DEPEND="${RDEPEND}
-	>=dev-util/scons-1.2"
-
-S="${WORKDIR}"
-MY_S="${WORKDIR}"/cctbx_sources
-MY_B="${WORKDIR}"/cctbx_build
-
-pkg_setup() {
-	use openmp && FORTRAN_NEED_OPENMP="1"
-	fortran-2_pkg_setup
-	if use openmp && ! tc-has-openmp; then
-		ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
-		ewarn "If you want to build ${PN} with OpenMP, abort now,"
-		ewarn "and switch CC to an OpenMP capable compiler"
-	fi
-	python_set_active_version 2
-}
-
-src_prepare() {
-	local opts
-	local optsld
-
-	epatch \
-		"${FILESDIR}"/${PV}-tst_server.py.patch \
-		"${FILESDIR}"/${PV}-boost.patch \
-		"${FILESDIR}"/${PV}-clipper.patch \
-		"${FILESDIR}"/${PV}-flags.patch \
-		"${FILESDIR}"/${PV}-soname.patch \
-		"${FILESDIR}"/${PV}-gcc-4.6.patch
-
-	eprefixify "${MY_S}"/scitbx/libtbx_refresh.py
-
-	rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" || die
-	find "${MY_S}/clipper" -name "*.h" -delete || die
-
-	echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
-}
-
-src_configure() {
-	local compiler
-	local myconf
-
-	myconf="${MY_S}/libtbx/configure.py"
-
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-	myconf="${myconf} --compiler=${compiler}"
-
-	# Additional USE flag usage
-	check_use openmp
-	myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
-
-	use threads && USEthreads="--enable-boost-threads" && \
-		ewarn "If using boost threads openmp support is disabled"
-
-	myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
-
-	mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
-	cd "${MY_B}"
-
-	myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
-	einfo "configuring with ${python} ${myconf}"
-
-	$(PYTHON) ${myconf} || die "configure failed"
-}
-
-src_compile() {
-	local makeopts_exp
-
-	cd "${MY_B}"
-
-	makeopts_exp=${MAKEOPTS/j/j }
-	makeopts_exp=${makeopts_exp%-l[0-9]*}
-
-	source setpaths_all.sh
-
-	einfo "compiling with libtbx.scons ${makeopts_exp}"
-	libtbx.scons ${makeopts_exp} .|| die "make failed"
-}
-
-src_test(){
-	source "${MY_B}"/setpaths_all.sh
-	libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
-	libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
-	libtbx.python ${CCTBX_DIST}/run_tests.py  ${MAKEOPTS_EXP} \
-	|| die "test failed"
-}
-
-src_install(){
-#	find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
-#	sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
-#	    -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g"  \
-#	    -i '{}' \; || die "Fail to correct path"
-
-	sed \
-		-e "s:${MY_B}:${EPREFIX}/usr:g" \
-		-e "s:${MY_S}:${EPREFIX}/$(python_get_sitedir):g" \
-		-i "${MY_B}/libtbx_env" || die
-
-	insinto /usr/share/cctbx
-	doins "${MY_B}/libtbx_env" || die
-
-	ebegin "removing unnessary files"
-		rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
-		find "${S}" -type f -name "*conftest*" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.o" -delete || die "failed to remove uneeded *.o"
-		find "${S}" -type f -name "*.c" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.f" -delete || die "failed to remove uneeded *.c"
-		find "${S}" -type f -name "*.cpp" -delete || die "failed to remove uneeded *.cpp"
-		find "${S}" -type f -name "*.pyc" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "SCons*" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "Makefile" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type f -name "config.log" -delete || die "failed to remove uneeded *.pyc"
-		find "${S}" -type d -empty -delete || die
-		find "${MY_B}" -maxdepth 1 -type f -delete || die
-	eend
-
-	dobin "${MY_B}"/bin/* || die
-	rm -rf "${MY_B}/bin"
-	dolib.so "${MY_B}"/lib/lib* || die
-	rm -f "${MY_B}"/lib/lib*
-
-	insinto /usr/include
-	doins -r "${MY_B}"/include/* || die
-	rm -rf "${MY_B}/include"
-
-	insinto /usr/libexec/${PN}
-	doins -r "${MY_B}"/* || die
-	find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
-
-	cd "${MY_S}"
-	insinto $(python_get_sitedir)
-	doins -r * || die
-	exeinto $(python_get_sitedir)
-	doexe "${MY_B}"/lib/* || die
-	rm -rvf "${MY_B}/lib"
-
-	sed \
-		-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-		-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-		-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-		-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/LIBTBX_BUILD/s:${MY_B}:${EPREFIX}/usr/share/cctbx:g" \
-		-e "s:${MY_B}/exe_dev/:${EPREFIX}/usr/libexec/${PN}/exe_dev/:g" \
-		-i "${ED}"/usr/bin/* || die
-
-}
-
-pkg_postinst () {
-	python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-pkg_postrm () {
-	python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-check_use() {
-	for var in $@; do
-		if use ${var}; then
-			printf -v "USE_$var" True
-		else
-			printf -v "USE_$var" False
-		fi
-	shift
-	done
-}
diff --git a/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild b/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild
deleted file mode 100644
index e76927d27f80..000000000000
--- a/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild
+++ /dev/null
@@ -1,198 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild,v 1.2 2012/02/10 22:52:33 hwoarang Exp $
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils fortran-2 prefix python toolchain-funcs
-
-MY_PV="${PV//./_}"
-
-DESCRIPTION="Computational Crystallography Toolbox"
-HOMEPAGE="http://cctbx.sourceforge.net/"
-SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz"
-
-LICENSE="cctbx-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE="+minimal openmp threads"
-
-RDEPEND="
-	virtual/fortran
-	<dev-libs/boost-1.48[python]
-	sci-libs/clipper
-	sci-libs/fftw
-	!minimal? (
-		sci-chemistry/cns
-		sci-chemistry/shelx )"
-DEPEND="${RDEPEND}
-	>=dev-util/scons-1.2"
-
-S="${WORKDIR}"
-MY_S="${WORKDIR}"/cctbx_sources
-MY_B="${WORKDIR}"/cctbx_build
-
-pkg_setup() {
-	use openmp && FORTRAN_NEED_OPENMP="1"
-	fortran-2_pkg_setup
-	if use openmp && ! tc-has-openmp; then
-		ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc"
-		ewarn "If you want to build ${PN} with OpenMP, abort now,"
-		ewarn "and switch CC to an OpenMP capable compiler"
-	fi
-	python_set_active_version 2
-}
-
-src_prepare() {
-	local opts
-	local optsld
-
-	epatch \
-		"${FILESDIR}"/${PV}-tst_server.py.patch \
-		"${FILESDIR}"/${PV}-boost.patch \
-		"${FILESDIR}"/${PV}-clipper.patch \
-		"${FILESDIR}"/${PV}-flags.patch \
-		"${FILESDIR}"/${PV}-soname.patch \
-		"${FILESDIR}"/${PV}-gcc-4.6.patch
-
-	eprefixify "${MY_S}"/scitbx/libtbx_refresh.py
-
-	rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" || die
-	find "${MY_S}/clipper" -name "*.h" -delete || die
-
-	echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py
-}
-
-src_configure() {
-	local compiler
-	local myconf
-
-	myconf="${MY_S}/libtbx/configure.py"
-
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-	myconf="${myconf} --compiler=${compiler}"
-
-	# Additional USE flag usage
-	check_use openmp
-	myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}"
-
-	use threads && USEthreads="--enable-boost-threads" && \
-		ewarn "If using boost threads openmp support is disabled"
-
-	myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags"
-
-	mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}"
-	cd "${MY_B}"
-
-	myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable"
-	einfo "configuring with ${python} ${myconf}"
-
-	$(PYTHON) ${myconf} || die "configure failed"
-}
-
-src_compile() {
-	local makeopts_exp
-
-	cd "${MY_B}"
-
-	makeopts_exp=${MAKEOPTS/j/j }
-	makeopts_exp=${makeopts_exp%-l[0-9]*}
-
-	source setpaths_all.sh
-
-	einfo "compiling with libtbx.scons ${makeopts_exp}"
-	libtbx.scons ${makeopts_exp} .|| die "make failed"
-}
-
-src_test(){
-	source "${MY_B}"/setpaths_all.sh
-	libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \
-	libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \
-	libtbx.python ${CCTBX_DIST}/run_tests.py  ${MAKEOPTS_EXP} \
-	|| die "test failed"
-}
-
-src_install(){
-	local lib baselib
-#	find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \
-#	sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \
-#	    -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g"  \
-#	    -i '{}' \; || die "Fail to correct path"
-
-	sed \
-		-e "s:${MY_B}:${EPREFIX}/usr:g" \
-		-e "s:${MY_S}:${EPREFIX}/$(python_get_sitedir):g" \
-		-i "${MY_B}/libtbx_env" || die
-
-	insinto /usr/share/cctbx
-	doins "${MY_B}/libtbx_env" || die
-
-	ebegin "removing unnessary files"
-		rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons"
-		find -O3 "${S}" -type f \
-			\( -name "*conftest*" -o -name "*.o" -o -name "*.c" -o -name "*.f" -o -name "*.cpp" -o \
-			-name "*.pyc" -o -name "SCons*" -o -name "Makefile" -o -name "config.log" \) -delete || die
-		find "${S}" -type d -empty -delete || die
-		find "${MY_B}" -maxdepth 1 -type f -delete || die
-	eend
-
-	dobin "${MY_B}"/bin/* || die
-	rm -rf "${MY_B}/bin"
-	dolib.so "${MY_B}"/lib/lib* || die
-	mv "${ED}"/usr/$(get_libdir)/libscitbx_min{,i}pack.so || die
-	rm -f "${MY_B}"/lib/lib*
-
-	for lib in "${ED}"/usr/$(get_libdir)/*.so; do
-		baselib=$(basename ${lib})
-		mv ${lib}{,.0.0}
-		dosym ${baselib}.0.0 /usr/$(get_libdir)/${baselib}
-	done
-
-	insinto /usr/include
-	doins -r "${MY_B}"/include/* || die
-	rm -rf "${MY_B}/include"
-
-	insinto /usr/libexec/${PN}
-	doins -r "${MY_B}"/* || die
-	find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \;
-
-	cd "${MY_S}"
-	insinto $(python_get_sitedir)
-	doins -r * || die
-	exeinto $(python_get_sitedir)
-	doexe "${MY_B}"/lib/* || die
-	rm -rf "${MY_B}/lib"
-
-	sed \
-		-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \
-		-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \
-		-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \
-		-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \
-		-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \
-		-e "/LIBTBX_BUILD/s:${MY_B}:${EPREFIX}/usr/share/cctbx:g" \
-		-e "s:${MY_B}/exe_dev/:${EPREFIX}/usr/libexec/${PN}/exe_dev/:g" \
-		-i "${ED}"/usr/bin/* || die
-
-}
-
-pkg_postinst () {
-	python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-pkg_postrm () {
-	python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx
-}
-
-check_use() {
-	for var in $@; do
-		if use ${var}; then
-			printf -v "USE_$var" True
-		else
-			printf -v "USE_$var" False
-		fi
-	shift
-	done
-}