Change umfpack flag to sparse for consistency

(Portage version: 2.2.01.22013-prefix/cvs/Linux x86_64, signed Manifest commit with key 0x13CB1360)

5 files changed, 19 insertions, 192 deletions

diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index 6d7d16f37ee8..5213bb3e4932 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/scipy
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.93 2013/06/09 17:58:01 floppym Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.94 2013/06/17 23:29:09 bicatali Exp $
+
+  17 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org>
+  -files/scipy-0.11.0-test_basic.patch, -scipy-0.11.0-r1.ebuild, metadata.xml,
+  scipy-0.9.0-r1.ebuild:
+  Change umfpack flag to sparse for consistency
 
   09 Jun 2013; Mike Gilbert <floppym@gentoo.org> scipy-0.11.0-r1.ebuild,
   scipy-0.12.0.ebuild:
diff --git a/sci-libs/scipy/files/scipy-0.11.0-test_basic.patch b/sci-libs/scipy/files/scipy-0.11.0-test_basic.patch
deleted file mode 100644
index 0b1018a3b9c0..000000000000
--- a/sci-libs/scipy/files/scipy-0.11.0-test_basic.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-From 6c1cd446bb6c3ffcc131de5b81e21b481400c334 Mon Sep 17 00:00:00 2001
-From: Pauli Virtanen <pav@iki.fi>
-Date: Sat, 3 Nov 2012 17:13:30 +0200
-Subject: [PATCH] TST: special: fix test_basic.py:cephes_vs_amos_mass_test
-
----
- scipy/special/tests/test_basic.py |   22 ++++++++++++++--------
- 1 file changed, 14 insertions(+), 8 deletions(-)
-
-diff --git a/scipy/special/tests/test_basic.py b/scipy/special/tests/test_basic.py
-index 973322a..6ef4f7f 100644
---- a/scipy/special/tests/test_basic.py
-+++ b/scipy/special/tests/test_basic.py
-@@ -1770,17 +1770,23 @@ def test_iv_cephes_vs_amos_mass_test(self):
-         x = np.random.pareto(0.2, N) * (-1)**np.random.randint(2, size=N)
- 
-         imsk = (np.random.randint(8, size=N) == 0)
--        v[imsk] = v.astype(int)
-+        v[imsk] = v[imsk].astype(int)
- 
--        c1 = special.iv(v, x)
--        c2 = special.iv(v, x+0j)
-+        old_err = np.seterr(all='ignore')
-+        try:
-+            c1 = special.iv(v, x)
-+            c2 = special.iv(v, x+0j)
- 
--        # deal with differences in the inf cutoffs
--        c1[abs(c1) > 1e300] = np.inf
--        c2[abs(c2) > 1e300] = np.inf
-+            # deal with differences in the inf and zero cutoffs
-+            c1[abs(c1) > 1e300] = np.inf
-+            c2[abs(c2) > 1e300] = np.inf
-+            c1[abs(c1) < 1e-300] = 0
-+            c2[abs(c2) < 1e-300] = 0
- 
--        dc = abs(c1/c2 - 1)
--        dc[np.isnan(dc)] = 0
-+            dc = abs(c1/c2 - 1)
-+            dc[np.isnan(dc)] = 0
-+        finally:
-+            np.seterr(**old_err)
- 
-         k = np.argmax(dc)
- 
--- 
-1.7.10
-
diff --git a/sci-libs/scipy/metadata.xml b/sci-libs/scipy/metadata.xml
index bb5f7eb29fbc..4ee19593821e 100644
--- a/sci-libs/scipy/metadata.xml
+++ b/sci-libs/scipy/metadata.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-  <herd>sci</herd>
-  <longdescription lang="en">
+<herd>sci</herd>
+<longdescription lang="en">
   SciPy is an open source library of scientific tools for Python. SciPy
   supplements the popular numpy module, gathering a variety of high level
   science and engineering modules together as a single package.
@@ -10,11 +10,10 @@
   integration, special functions, signal and image processing, genetic
   algorithms, ODE solvers, and others.
 </longdescription>
-  <use>
-    <flag name="umfpack">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
-    <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
-  </use>
-  <upstream>
-    <remote-id type="pypi">scipy</remote-id>
-  </upstream>
+<use>
+  <flag name="sparse">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag>
+</use>
+<upstream>
+  <remote-id type="pypi">scipy</remote-id>
+</upstream>
 </pkgmetadata>
diff --git a/sci-libs/scipy/scipy-0.11.0-r1.ebuild b/sci-libs/scipy/scipy-0.11.0-r1.ebuild
deleted file mode 100644
index e3d0df2d4eb4..000000000000
--- a/sci-libs/scipy/scipy-0.11.0-r1.ebuild
+++ /dev/null
@@ -1,129 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.11.0-r1.ebuild,v 1.7 2013/06/09 17:58:01 floppym Exp $
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_5,2_6,2_7} )
-
-inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
-
-DESCRIPTION="Scientific algorithms library for Python"
-HOMEPAGE="http://www.scipy.org/"
-SRC_URI="
-	mirror://sourceforge/${PN}/${P}.tar.gz
-	doc? (
-		http://docs.scipy.org/doc/${P}/${PN}-html.zip -> ${P}-html.zip
-		http://docs.scipy.org/doc/${P}/${PN}-ref.pdf -> ${P}-ref.pdf
-	)"
-
-LICENSE="BSD LGPL-2"
-SLOT="0"
-IUSE="doc test umfpack"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
-
-CDEPEND="
-	dev-python/numpy[lapack,${PYTHON_USEDEP}]
-	sci-libs/arpack
-	virtual/cblas
-	virtual/lapack
-	umfpack? ( sci-libs/umfpack )"
-DEPEND="${CDEPEND}
-	virtual/pkgconfig
-	doc? ( app-arch/unzip )
-	test? ( dev-python/nose[${PYTHON_USEDEP}] )
-	umfpack? ( dev-lang/swig )"
-
-RDEPEND="${CDEPEND}
-	virtual/python-imaging[${PYTHON_USEDEP}]"
-
-DOCS=( HACKING.rst.txt README.txt THANKS.txt LATEST.txt TOCHANGE.txt )
-
-DISTUTILS_IN_SOURCE_BUILD=1
-
-src_unpack() {
-	unpack ${P}.tar.gz
-	if use doc; then
-		unzip -qo "${DISTDIR}"/${P}-html.zip -d html || die
-	fi
-}
-
-pc_incdir() {
-	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
-		sed -e 's/^-I//' -e 's/[ ]*-I/:/g'
-}
-
-pc_libdir() {
-	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
-		sed -e 's/^-L//' -e 's/[ ]*-L/:/g'
-}
-
-pc_libs() {
-	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
-		sed -e 's/[ ]-l*\(pthread\|m\)[ ]*//g' \
-		-e 's/^-l//' -e 's/[ ]*-l/,/g'
-}
-
-python_prepare_all() {
-	local libdir="${EPREFIX}"/usr/$(get_libdir)
-
-	# scipy automatically detects libraries by default
-	export {FFTW,FFTW3,UMFPACK}=None
-	use umfpack && unset UMFPACK
-	# the missing symbols are in -lpythonX.Y, but since the version can
-	# differ, we just introduce the same scaryness as on Linux/ELF
-	[[ ${CHOST} == *-darwin* ]] \
-		&& append-ldflags -bundle "-undefined dynamic_lookup" \
-		|| append-ldflags -shared
-	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
-	# hack to force F77 to be FC until bug #278772 is fixed
-	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
-	export F90="${FC}"
-	export SCIPY_FCONFIG="config_fc --noopt --noarch"
-	append-fflags -fPIC
-
-	cat >> site.cfg <<-EOF
-		[blas]
-		include_dirs = $(pc_incdir cblas)
-		library_dirs = $(pc_libdir cblas blas):${libdir}
-		blas_libs = $(pc_libs cblas blas)
-		[lapack]
-		library_dirs = $(pc_libdir lapack):${libdir}
-		lapack_libs = $(pc_libs lapack)
-	EOF
-
-	local PATCHES=(
-		"${FILESDIR}"/${P}-test_basic.patch
-	)
-
-	distutils-r1_python_prepare_all
-}
-
-python_compile() {
-	distutils-r1_python_compile ${SCIPY_FCONFIG}
-}
-
-python_test() {
-	distutils_install_for_testing ${SCIPY_FCONFIG}
-
-	cd "${TMPDIR}" || die
-	"${PYTHON}" -c "
-import scipy, sys
-r = scipy.test('full', verbose=10)
-sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
-}
-
-python_install() {
-	distutils-r1_python_install ${SCIPY_FCONFIG}
-
-	if use doc; then
-		dohtml -r "${WORKDIR}"/html/.
-		dodoc "${DISTDIR}"/${P}*pdf
-	fi
-}
-
-pkg_postinst() {
-	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
-	elog "to your prefered image viewer if you don't like the default one. Ex:"
-	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
-}
diff --git a/sci-libs/scipy/scipy-0.9.0-r1.ebuild b/sci-libs/scipy/scipy-0.9.0-r1.ebuild
index 87805f517ef0..2e560519bd98 100644
--- a/sci-libs/scipy/scipy-0.9.0-r1.ebuild
+++ b/sci-libs/scipy/scipy-0.9.0-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.9.0-r1.ebuild,v 1.13 2013/03/07 14:37:21 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.9.0-r1.ebuild,v 1.14 2013/06/17 23:29:09 bicatali Exp $
 
 EAPI="3"
 
@@ -22,7 +22,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
 
 LICENSE="BSD"
 SLOT="0"
-IUSE="doc umfpack"
+IUSE="doc sparse"
 KEYWORDS="amd64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
 
 CDEPEND="
@@ -32,11 +32,11 @@ CDEPEND="
 	sci-libs/superlu
 	virtual/cblas
 	virtual/lapack
-	umfpack? ( sci-libs/umfpack )"
+	sparse? ( sci-libs/umfpack )"
 DEPEND="${CDEPEND}
 	virtual/pkgconfig
 	doc? ( app-arch/unzip )
-	umfpack? ( dev-lang/swig )"
+	sparse? ( dev-lang/swig )"
 RDEPEND="${CDEPEND}
 	dev-python/imaging"
 
@@ -49,7 +49,7 @@ pkg_setup() {
 	fortran-2_pkg_setup
 	# scipy automatically detects libraries by default
 	export {FFTW,FFTW3,UMFPACK}=None
-	use umfpack && unset UMFPACK
+	use sparse && unset UMFPACK
 	# the missing symbols are in -lpythonX.Y, but since the version can
 	# differ, we just introduce the same scaryness as on Linux/ELF
 	[[ ${CHOST} == *-darwin* ]] \