Added new revision to fix undefined lapack symbols (see bug #195619).

(Portage version: 2.1.3.13)

4 files changed, 241 insertions, 1 deletions

diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index 12845b755b69..a0da35d21479 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-libs/scipy
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.24 2007/10/05 14:01:38 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.25 2007/10/18 14:17:10 markusle Exp $
+
+*scipy-0.6.0-r2 (18 Oct 2007)
+
+  18 Oct 2007; Markus Dittrich <markusle@gentoo.org>
+  +files/scipy-0.6.0-clapack-symbol-fix.patch, 
+  +scipy-0.6.0-r2.ebuild:
+  Added new revision to fix undefined lapack symbols (see bug #195619).
 
 *scipy-0.6.0-r1 (05 Oct 2007)
 
diff --git a/sci-libs/scipy/files/digest-scipy-0.6.0-r2 b/sci-libs/scipy/files/digest-scipy-0.6.0-r2
new file mode 100644
index 000000000000..aa28d16fa675
--- /dev/null
+++ b/sci-libs/scipy/files/digest-scipy-0.6.0-r2
@@ -0,0 +1,3 @@
+MD5 417adf3bfe03f4c23c9fb265018e545c scipy-0.6.0.tar.gz 6572954
+RMD160 391f2067f7dcc133e7e8622df93a2a0cd5ebbe5b scipy-0.6.0.tar.gz 6572954
+SHA256 5f70390963fb4e3ae8cf5effa301c160ef68c791098e2ea95b99380e298eac4f scipy-0.6.0.tar.gz 6572954
diff --git a/sci-libs/scipy/files/scipy-0.6.0-clapack-symbol-fix.patch b/sci-libs/scipy/files/scipy-0.6.0-clapack-symbol-fix.patch
new file mode 100644
index 000000000000..ff2d521363d2
--- /dev/null
+++ b/sci-libs/scipy/files/scipy-0.6.0-clapack-symbol-fix.patch
@@ -0,0 +1,102 @@
+diff -Naur scipy-0.6.0/scipy/linalg/generic_clapack.pyf scipy-0.6.0-new/scipy/linalg/generic_clapack.pyf
+--- scipy-0.6.0/scipy/linalg/generic_clapack.pyf	2007-09-22 03:56:25.000000000 -0400
++++ scipy-0.6.0-new/scipy/linalg/generic_clapack.pyf	2007-10-13 10:13:53.000000000 -0400
+@@ -20,7 +20,7 @@
+    ! U is unit upper diagonal triangular, L is lower triangular,
+    ! piv pivots columns.
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>gesv
++     fortranname  <tchar=s,d,c,z>gesv_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>gesv
+      callstatement <tchar=s,d,c,z>gesv_return_value = info = (*f2py_func)(102-rowmajor,n,nrhs,a,n,piv,b,n)
+      callprotoargument const int,const int,const int,<type_in_c>*,const int,int*,<type_in_c>*,const int
+@@ -44,7 +44,7 @@
+    ! Compute an LU factorization of a  general  M-by-N  matrix  A.
+    ! A * P = L * U
+      threadsafe
+-     fortranname  clapack_<tchar=s,d,c,z>getrf
++     fortranname  <tchar=s,d,c,z>getrf_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>getrf
+      callstatement <tchar=s,d,c,z>getrf_return_value = info = (*f2py_func)(102-rowmajor,m,n,a,(rowmajor?n:m),piv)
+      callprotoargument const int,const int,const int,<type_in_c>*,const int,int*
+@@ -67,7 +67,7 @@
+    ! Solve A^H * X = B if trans=2
+    ! A * P = L * U
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>getrs
++     fortranname  <tchar=s,d,c,z>getrs_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>getrs
+      callstatement <tchar=s,d,c,z>getrs_return_value = info = (*f2py_func)(102-rowmajor,111+trans,n,nrhs,lu,n,piv,b,n)
+      callprotoargument const int,const int,const int,const int,<type_in_c>*,const int,int*,<type_in_c>*,const int
+@@ -91,7 +91,7 @@
+    ! Find A inverse A^-1.
+    ! A * P = L * U
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>getri
++     fortranname  <tchar=s,d,c,z>getri_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>getri
+      callstatement <tchar=s,d,c,z>getri_return_value = info = (*f2py_func)(102-rowmajor,n,lu,n,piv)
+      callprotoargument const int,const int,<type_in_c>*,const int,const int*
+@@ -115,7 +115,7 @@
+    ! A = L * L^T, C = L if lower = 1
+    ! C is triangular matrix of the corresponding Cholesky decomposition.
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>posv
++     fortranname  <tchar=s,d,c,z>posv_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>posv
+      callstatement <tchar=s,d,c,z>posv_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,nrhs,a,n,b,n)
+      callprotoargument const int,const int,const int,const int,<type_in_c>*,const int,<type_in_c>*,const int
+@@ -142,7 +142,7 @@
+      ! C is triangular matrix of the corresponding Cholesky decomposition.
+      ! clean==1 zeros strictly lower or upper parts of U or L, respectively
+ 
+-     fortranname  clapack_<tchar=s,d>potrf
++     fortranname  <tchar=s,d>potrf_
+      integer intent(c,hide) ::  <tchar=s,d>potrf
+      callstatement <tchar=s,d>potrf_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,a,n); if(clean){int i,j;if(lower){for(i=0;i<n;++i) for(j=i+1;j<n;++j) *(a+i*n+j)=0.0;} else {for(i=0;i<n;++i) for(j=i+1;j<n;++j) *(a+j*n+i)=0.0;}}
+      callprotoargument const int,const int,const int,<type_in_c>*,const int
+@@ -167,7 +167,7 @@
+      ! C is triangular matrix of the corresponding Cholesky decomposition.
+      ! clean==1 zeros strictly lower or upper parts of U or L, respectively
+ 
+-     fortranname  clapack_<tchar=c,z>potrf
++     fortranname  <tchar=c,z>potrf_
+      integer intent(c,hide) ::  <tchar=c,z>potrf
+      callstatement <tchar=c,z>potrf_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,a,n); if(clean){int i,j,k;if(lower){for(i=0;i<n;++i) for(j=i+1;j<n;++j) {k=i*n+j;(a+k)->r=(a+k)->i=0.0;}} else {for(i=0;i<n;++i) for(j=i+1;j<n;++j) {k=j*n+i;(a+k)->r=(a+k)->i=0.0;}}}
+      callprotoargument const int,const int,const int,<type_in_c>*,const int
+@@ -193,7 +193,7 @@
+    ! A = L * L^T, C = L if lower = 1
+    ! C is triangular matrix of the corresponding Cholesky decomposition.
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>potrs
++     fortranname  <tchar=s,d,c,z>potrs_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>potrs
+      callstatement <tchar=s,d,c,z>potrs_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,nrhs,c,n,b,n)
+      callprotoargument const int,const int,const int,const int,<type_in_c>*,const int,<type_in_c>*,const int
+@@ -219,7 +219,7 @@
+      ! A = L * L^T, C = L if lower = 1
+      ! C is triangular matrix of the corresponding Cholesky decomposition.
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>potri
++     fortranname  <tchar=s,d,c,z>potri_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>potri
+      callstatement <tchar=s,d,c,z>potri_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,c,n)
+      callprotoargument const int,const int,const int,<type_in_c>*,const int
+@@ -243,7 +243,7 @@
+      ! L * L^T, C = L if lower = 1
+      ! C is triangular matrix of the corresponding Cholesky decomposition.
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>lauum
++     fortranname  <tchar=s,d,c,z>lauum_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>lauum
+      callstatement <tchar=s,d,c,z>lauum_return_value = info = (*f2py_func)(102-rowmajor,121+lower,n,c,n)
+      callprotoargument const int,const int,const int,<type_in_c>*,const int
+@@ -267,7 +267,7 @@
+      ! C is non-unit triangular matrix if unitdiag = 0
+      ! C is unit triangular matrix if unitdiag = 1
+ 
+-     fortranname  clapack_<tchar=s,d,c,z>trtri
++     fortranname  <tchar=s,d,c,z>trtri_
+      integer intent(c,hide) ::  <tchar=s,d,c,z>trtri
+      callstatement <tchar=s,d,c,z>trtri_return_value = info = (*f2py_func)(102-rowmajor,121+lower,131+unitdiag,n,c,n)
+      callprotoargument const int,const int,const int,const int,<type_in_c>*,const int
diff --git a/sci-libs/scipy/scipy-0.6.0-r2.ebuild b/sci-libs/scipy/scipy-0.6.0-r2.ebuild
new file mode 100644
index 000000000000..2813e1abd714
--- /dev/null
+++ b/sci-libs/scipy/scipy-0.6.0-r2.ebuild
@@ -0,0 +1,128 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.6.0-r2.ebuild,v 1.1 2007/10/18 14:17:10 markusle Exp $
+
+NEED_PYTHON=2.3
+
+inherit eutils distutils fortran
+
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="http://www.scipy.org/"
+LICENSE="BSD"
+
+SLOT="0"
+
+IUSE="fftw umfpack sandbox"
+
+KEYWORDS="~amd64 ~ppc ~x86"
+
+DEPEND=">=dev-python/numpy-1.0.3.1
+	virtual/lapack
+	fftw? ( =sci-libs/fftw-2.1* )
+	umfpack? ( sci-libs/umfpack dev-lang/swig )
+	sandbox? ( >=sci-libs/netcdf-3.6 x11-libs/libX11 )"
+
+RDEPEND=">=dev-python/numpy-1.0.3.1
+	dev-python/imaging
+	virtual/lapack
+	fftw? ( =sci-libs/fftw-2.1* )
+	umfpack? ( sci-libs/umfpack )
+	sandbox? ( >=sci-libs/netcdf-3.6 x11-libs/libX11 )"
+
+# test still buggy on lapack with 2 failures on check_syevr
+# (lapack float). check every version bump.
+RESTRICT="test"
+
+DOCS="THANKS.txt DEVELOPERS.txt LATEST.txt TOCHANGE.txt FORMAT_GUIDELINES.txt"
+
+scipy_fortran_setup() {
+	FORTRAN="gfortran g77 ifc"
+	fortran_pkg_setup
+	local fc=
+	case ${FORTRANC} in
+		gfortran) fc=gnu95 ;;
+		g77) fc=gnu ;;
+		ifc|ifort)
+			if use ia64; then
+				fc=intele
+			elif use amd64; then
+				fc=intelem
+			else
+				fc=intel
+			fi
+			;;
+		*)	eerror "Unknown fortran compiler: ${FORTRANC}"
+			die "scipy_fortran_setup failed" ;;
+	esac
+
+	# when fortran flags are set, pic is removed.
+	use amd64 && [[ -n ${FFLAGS} ]] && FFLAGS="${FFLAGS} -fPIC"
+	export SCIPY_FCONFIG="config_fc --fcompiler=${fc}"
+}
+
+# see numpy ebuild about unsetting LDFLAGS
+LDFLAGS_sav="${LDFLAGS}"
+unset LDFLAGS
+
+pkg_setup() {
+	[[ -n ${LDFLAGS_sav} ]] && einfo "Ignoring LDFLAGS=${LDFLAGS_sav}"
+	if use umfpack && ! built_with_use dev-lang/swig python; then
+		eerror "With umfpack enabled you need"
+		eerror "dev-lang/swig with python enabled"
+		einfo  "Please re-emerge swig with USE=python"
+		die "needs swig with python"
+	fi
+	# scipy automatically detects libraries by default
+	export FFTW=None FFTW3=None UMFPACK=None DJBFFT=None
+	use fftw && unset FFTW
+	use umfpack && unset UMFPACK
+	use sandbox && elog "Warning: using sandbox modules at your own risk!"
+	scipy_fortran_setup
+}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+	epatch "${FILESDIR}"/${P}-randomkit.patch
+	epatch "${FILESDIR}"/${P}-cdf.patch
+	epatch "${FILESDIR}"/${P}-fftw-fix.patch
+	epatch "${FILESDIR}"/${P}-clapack-symbol-fix.patch
+
+	if use sandbox; then
+		cd scipy/sandbox
+		ls -1 */__init__.py \
+			| sed -e 's:/__init__.py::' \
+			| grep -v exmplpackage \
+			> enabled_packages.txt \
+			|| die "sandbox listing failed"
+	fi
+}
+
+src_compile() {
+	distutils_src_compile ${SCIPY_FCONFIG}
+}
+
+src_test() {
+	"${python}" setup.py install \
+		--home="${S}"/test \
+		--no-compile \
+		${SCIPY_FCONFIG} || die "install test failed"
+	pushd "${S}"/test/lib*/python
+	PYTHONPATH=. "${python}" -c \
+		"import scipy as s;import sys;sys.exit(s.test(10,3))" \
+		 2>&1 | tee test.log
+	grep -q OK test.log || die "test failed"
+	popd
+	rm -rf test
+}
+
+src_install() {
+	distutils_src_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer if you don't like the default one. Ex:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}