imagej: add 1.44n.

2 files changed, 118 insertions, 0 deletions

diff --git a/sci-biology/imagej/Manifest b/sci-biology/imagej/Manifest
new file mode 100644
index 0000000..1b6b117
--- /dev/null
+++ b/sci-biology/imagej/Manifest
@@ -0,0 +1,4 @@
+DIST ImageJ.png 13012 RMD160 65843f558e99d08cb42e06eb82b2a1953438f3e1 SHA1 52a6d22da2e72a8f18c4c2a46655217f4429bb49 SHA256 02b93e7614a2ab52ca5dbdc941dc99b4b461c91b28203d33e877746f97e12b86
+DIST ij143.zip 3168198 RMD160 9b6d55a79466cf4f9790b9cdb031ac724fc76d72 SHA1 7c2f0fe96465ac3f835a3f173c9acd43bd9e8f2b SHA256 a4ab1e1f34ea4330694f245760132579bbbba4248835e180929c2c264d65ed62
+DIST ij144n-src.zip 1273772 RMD160 4e95395b4767ba6c47c77ca66fbc6a46de59cc82 SHA1 151f0d77c82aa4fb05818f037d2eb823fc0eef85 SHA256 884f2467fa9dff3c53a87d3003ef7fbd471b13585a93667fb2243a0f8d3966a4
+EBUILD imagej-1.44n.ebuild 2973 RMD160 fe3a11b5460127164af76897a95eaa766e06894c SHA1 cc5c62b80dd44ec87302c647cee04a6d42573365 SHA256 90701f7a096ea473c382812730a6c875a0df0252197c8ad0cc44ffd972bfd914
diff --git a/sci-biology/imagej/imagej-1.44n.ebuild b/sci-biology/imagej/imagej-1.44n.ebuild
new file mode 100644
index 0000000..f6787c0
--- /dev/null
+++ b/sci-biology/imagej/imagej-1.44n.ebuild
@@ -0,0 +1,114 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+inherit java-pkg-2 java-ant-2 eutils versionator
+
+MY_PN="ij"
+MY_PV=$(delete_all_version_separators)
+
+# NOTE:
+# as plugins are regularly lagging behind, we use the pack released for previous
+# version instead. Change to present version locally if you are sure proper
+# version has been released.
+IJ_PV=$(expr ${MY_PV::3} - 1)
+
+DESCRIPTION="Image Processing and Analysis in Java"
+HOMEPAGE="http://rsb.info.nih.gov/ij/"
+
+SRC_URI="http://rsb.info.nih.gov/ij/download/src/${MY_PN}${MY_PV}-src.zip
+	http://rsb.info.nih.gov/ij/images/ImageJ.png
+	plugins? ( http://rsb.info.nih.gov/ij/download/zips/${MY_PN}${IJ_PV}.zip )"
+
+RESTRICT="nomirror"
+LICENSE="public-domain"
+SLOT="0"
+
+KEYWORDS="~x86 ~ppc ~amd64"
+
+IUSE="doc plugins debug"
+
+RDEPEND=">=virtual/jre-1.6
+	dev-java/java-config"
+DEPEND=">=virtual/jdk-1.6
+	dev-java/ant-core
+	${RDEPEND}"
+
+S=${WORKDIR}/source
+IJ_S=${WORKDIR}/ImageJ
+
+src_unpack() {
+	cp ${DISTDIR}/ImageJ.png ${WORKDIR}/${PN}.png
+	unpack ${A}
+	
+	if ! use debug ; then
+		sed -i 's: debug="on">: debug="off">:' ${S}/build.xml
+	fi
+}
+
+src_compile() {
+	local antflags="build"
+	use doc && antflags="${antflags} javadocs"
+
+	ant ${antflags} || die  "ant build failed"
+
+	# build finished, generate startup wrapper
+	cat <<EOF > ${T}/${PN}
+#!/bin/bash
+IJ_LIB=/usr/share/${PN}/lib
+if !([ "\${IJ_HOME}" ]) ; then
+	IJ_HOME=\${HOME}
+fi
+if [ -d \${IJ_HOME}/plugins ] ; then
+	IJ_PLG=\${IJ_HOME}
+else
+	IJ_PLG=/usr/share/${PN}/lib
+fi
+if !([ "\$IJ_MEM" ]) ; then
+	IJ_MEM=128
+fi
+if !([ "\$IJ_CP" ]) ; then
+	IJ_CP=\$(java-config -p imagej):\$(java-config -O)/lib/tools.jar
+else
+	IJ_CP=\$(java-config -p imagej):\$(java-config -O)/lib/tools.jar:\${IJ_CP}
+fi
+\$(java-config --java) \\
+	-Xmx\${IJ_MEM}m -Dswing.aatext=true \\
+	-Dawt.useSystemAAFontSettings=on\\
+	-cp \${IJ_CP} \\
+	-Duser.home=\${IJ_HOME} \\
+	-Dplugins.dir=\${IJ_PLG} \\
+	ij.ImageJ "\$@"
+EOF
+}
+
+src_install() {
+	java-pkg_dojar *.jar
+
+	dobin ${T}/${PN}
+
+	if use plugins ; then
+		cp -R ${IJ_S}/plugins ${D}/usr/share/${PN}/lib/
+		cp -R ${IJ_S}/macros ${D}/usr/share/${PN}/lib/
+	fi
+
+	use doc && java-pkg_dohtml -r ${WORKDIR}/api
+
+	insinto /usr/share/pixmaps
+	doins ${WORKDIR}/${PN}.png
+	make_desktop_entry "imagej %F" "ImageJ" ${PN}.png Graphics
+}
+
+pkg_postinst() {
+	einfo ""
+	einfo "You can configure the path of a folder, which contains \"plugins\" directory and IJ_Prefs.txt,"
+	einfo "by setting the environmental variable, \$IJ_HOME."
+	einfo "Default setting is \$IJ_HOME=\${HOME}, i.e. \${HOME}/plugins and \${HOME}/IJ_Prefs.txt."
+	einfo ""
+	einfo "You can also configure the memory size by setting the environmental variable, \$IJ_MEM,"
+	einfo "and the class path by setting the environmental variable, \$IJ_CP."
+	einfo ""
+	einfo "If you want to use much more plugins, please see http://rsb.info.nih.gov/ij/plugins/index.html"
+	einfo "and add *.class files to \$IJ_HOME/plugins folder"
+	einfo ""
+}