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| author |   Donnie Berkholz <dberkholz@gentoo.org> | 2010-06-03 10:29:36 -0500 |
|---|---|---|
| committer | Donnie Berkholz <dberkholz@gentoo.org> | 2010-06-03 10:29:36 -0500 |
| commit | bb72f0434eb00887b0bd7b1df623a25ee9222d83 (patch) | |
| tree | ba023f5aef03b68ac7b5e6540920935e8926d4f3 /sci-chemistry | |
| parent | autodock-vina: New ebuild for a docking program. (diff) | |
| download | dberkholz-bb72f0434eb00887b0bd7b1df623a25ee9222d83.tar.gz dberkholz-bb72f0434eb00887b0bd7b1df623a25ee9222d83.tar.bz2 dberkholz-bb72f0434eb00887b0bd7b1df623a25ee9222d83.zip | |
pyrx: bump to 0.6, now compatible with Autodock Vina.
Diffstat (limited to 'sci-chemistry')
| -rw-r--r-- | sci-chemistry/pyrx/Manifest | 6 | ||||
| -rw-r--r-- | sci-chemistry/pyrx/files/use-external-opal.patch | 6 | ||||
| -rw-r--r-- | sci-chemistry/pyrx/pyrx-0.6.ebuild (renamed from sci-chemistry/pyrx/pyrx-0.3.ebuild) | 18 |
3 files changed, 20 insertions, 10 deletions
diff --git a/sci-chemistry/pyrx/Manifest b/sci-chemistry/pyrx/Manifest index f44f954..448e38f 100644 --- a/sci-chemistry/pyrx/Manifest +++ b/sci-chemistry/pyrx/Manifest @@ -1,3 +1,3 @@ -AUX use-external-opal.patch 617 RMD160 58b274b148560d22f213ef0c6498a07082828fe6 SHA1 4ebd273b8ebacea6f7069e12f6e5c85f8bee3039 SHA256 585772e15ef59c680700c1bf2eb5df3f8889fa4522e97c8d668996fde7314576 -DIST PyRx-0.3-Source.tar.gz 257505 RMD160 42191f1c70b5dc87267c3dc71563b684d0439924 SHA1 d47612ac379b87c33c9654e879de58a43de4bd26 SHA256 c6dce9174ad7141cc069ed4ca69d39048d6345808b249c1aa8974412205a4707 -EBUILD pyrx-0.3.ebuild 1001 RMD160 e2bc843237e0deec851a7f3a6d7f53d9db1db084 SHA1 71bc2e301949e65af6fe79733b90aad2a9dc7d2a SHA256 940c7824d52cdaa0fcd26540d78f648b685c5ca2c132d977bf9be3fe8370612d +AUX use-external-opal.patch 584 RMD160 ca0512bfb8cd7afa0770ce8d90d28e6f91b3abef SHA1 2e7e8e04c8f362a8d3726cb3c2c2051788686f06 SHA256 f5faed8ecd2bc8bd06d008343d00d8a3c4cedf8dc857b2bde8fc847a6b161029 +DIST PyRx-0.6-Source.zip 1261435 RMD160 30fcd5004347b485d30582e82c02ed0a9649a168 SHA1 fca33cb505e2e39d8db61a9eda37fb403012e350 SHA256 d3f61db8b29dcd4bfbeb6f30f6200e29a81ee2a2bd3f26faf8ab23c25d3e928d +EBUILD pyrx-0.6.ebuild 1071 RMD160 75c938e6557e442351a3269bbd119a4e36f04682 SHA1 040e36f8d3c54ea8bc1d12be7d67496199500cb3 SHA256 ea6541a3177226296e1f224a446c767bc3548cf33279c467ea43c974d1e4b1ed diff --git a/sci-chemistry/pyrx/files/use-external-opal.patch b/sci-chemistry/pyrx/files/use-external-opal.patch index 1cf3d67..18fe056 100644 --- a/sci-chemistry/pyrx/files/use-external-opal.patch +++ b/sci-chemistry/pyrx/files/use-external-opal.patch @@ -1,8 +1,8 @@ ---- PyRx/webServices.py.orig 2009-09-14 21:34:14.000000000 -0500 -+++ PyRx/webServices.py 2009-09-14 21:34:23.000000000 -0500 +--- PyRx/webServices.py.orig 2010-06-03 10:19:16.348528867 -0500 ++++ PyRx/webServices.py 2010-06-03 10:19:22.516126260 -0500 @@ -1,8 +1,8 @@ #Author: Sargis Dallakyan (sargis@scripps.edu) - #$Header: /opt/cvs/PyRxDIST/PyRx/webServices.py,v 1.16 2009/07/30 18:09:30 sargis Exp $ + #$Id: webServices.py 47 2010-05-10 19:34:36Z sarkiss $ -from AppService.AppService_client import AppServiceLocator,\ +from AppService_client import AppServiceLocator,\ launchJobRequest, getOutputsRequest, queryStatusRequest, destroyRequest diff --git a/sci-chemistry/pyrx/pyrx-0.3.ebuild b/sci-chemistry/pyrx/pyrx-0.6.ebuild index 8e42c11..ac01077 100644 --- a/sci-chemistry/pyrx/pyrx-0.3.ebuild +++ b/sci-chemistry/pyrx/pyrx-0.6.ebuild @@ -10,7 +10,7 @@ MY_PN="PyRx" MY_P=${MY_PN}-${PV} DESCRIPTION="GUI for Virtual Screening with AutoDock" HOMEPAGE="http://pyrx.sf.net" -SRC_URI="http://pyrx.scripps.edu/download/${PV}/${MY_P}-Source.tar.gz" +SRC_URI="http://pyrx.scripps.edu/download/${PV}/${MY_P}-Source.zip" LICENSE="free-noncomm" SLOT="0" KEYWORDS="~amd64" @@ -23,7 +23,8 @@ RDEPEND=">=sci-chemistry/mgltools-autodocktools-1.5.4 sci-visualization/mayavi dev-python/opal-client >=sci-chemistry/openbabel-2.2.1 - >=sci-chemistry/autodock-4" + >=sci-chemistry/autodock-4 + >=sci-chemistry/autodock-vina-1.1.1" DEPEND="${RDEPEND}" S=${WORKDIR} @@ -33,6 +34,15 @@ src_prepare() { src_install() { distutils_src_install - cp -r PyRx/Images/silk_icons ${D}usr/$(get_libdir)/python${PYVER}/site-packages/${MY_PN}/Images/ || die - cp PyRx/preferences.ini ${D}usr/$(get_libdir)/python${PYVER}/site-packages/${MY_PN}/ || die + + PYVER=$(python_get_version) + PYRX="${D}usr/$(get_libdir)/python${PYVER}/site-packages/${MY_PN}" + cp -r PyRx/Images/silk_icons \ + ${PYRX}/Images/ \ + || die + cp PyRx/preferences.ini \ + ${PYRX}/ \ + || die + + dodoc README.txt || die } |