diff options
| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-07-18 19:12:10 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-07-18 19:12:10 +0200 |
| commit | c7a40f0c2955843da5c85d0abbeed58351547ce1 (patch) | |
| tree | 72dba872c6c99a09911ce50dd6091b75d76c6167 /sci-biology/BRAKER | |
| parent | sci-biology/jellyfish: version bump (diff) | |
| download | sci-c7a40f0c2955843da5c85d0abbeed58351547ce1.tar.gz sci-c7a40f0c2955843da5c85d0abbeed58351547ce1.tar.bz2 sci-c7a40f0c2955843da5c85d0abbeed58351547ce1.zip | |
sci-biology/BRAKER: version bump
New HOMEPAGE, SRC_URI, layout of .tar.gz tarball
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Diffstat (limited to 'sci-biology/BRAKER')
| -rw-r--r-- | sci-biology/BRAKER/BRAKER-2.1.2.ebuild (renamed from sci-biology/BRAKER/BRAKER-2.1.0.ebuild) | 15 | ||||
| -rw-r--r-- | sci-biology/BRAKER/Manifest | 2 |
2 files changed, 8 insertions, 9 deletions
diff --git a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild index 13d63d4b8..908e57e51 100644 --- a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -8,9 +8,10 @@ inherit perl-module DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf -HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker +HOMEPAGE="https://github.com/Gaius-Augustus/BRAKER + http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads" -SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/Gaius-Augustus/BRAKER/archive/v${PV}.tar.gz -> ${P}.tar.gz" # Example data for testing the BRAKER2 pipeline is available at # http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz (1.1 GB). @@ -29,14 +30,12 @@ RDEPEND="${DEPEND} sci-biology/augustus" #>=sci-biology/GeneMark_ET-bin-4.29" -S="${WORKDIR}"/BRAKER_v"${PV}" - src_install(){ perl_set_version - dobin *.pl + dobin scripts/*.pl insinto ${VENDOR_LIB}/${PN} - doins *.pm - dodoc userguide.pdf + doins scripts/*.pm + dodoc docs/userguide.pdf } pkg_postinst(){ diff --git a/sci-biology/BRAKER/Manifest b/sci-biology/BRAKER/Manifest index 0f3e0caf5..f7daf9f3f 100644 --- a/sci-biology/BRAKER/Manifest +++ b/sci-biology/BRAKER/Manifest @@ -1 +1 @@ -DIST BRAKER-2.1.0.tar.gz 444207 BLAKE2B a764303ba7b6d95cd4205f90e723f383afbe339a84f2d55e5b098cec5ef80b288caf82517af64ed761032bcfca24393bd112c50826fb0efe90d63eeeb5214a3b SHA512 0f2c9df14a2ce7bf655c14cbdaa943c01adc0aea15cd7c4bd538710f7809f22dabbf34dbddfb028352b13a7fc1cd5237882fb240c2b544aa4584461067ea54d8 +DIST BRAKER-2.1.2.tar.gz 10492582 BLAKE2B 5b18fb1bff68b27217cfed1d33691d5689cafd0560964252eb5a66f6b21dbf2296bf39fe823187ffee120f95be87efe735b38ae3ea1344a8500b0e113caf393e SHA512 1189bf67e9881d6580af11b3926d6d6a067f479bf5f21592068b2e5e48b2a5fd5f687bd2a3e02cdd876f678ad62ac02c87db232d921402a66011a50598687c6e |