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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-05-30 19:50:55 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-05-30 19:50:55 +0200 |
| commit | 59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0 (patch) | |
| tree | 4bbf9ca1bbfc12b1cc309cbf47a9cb44a4a5ecbf /sci-biology/fastqc | |
| parent | dev-python/ptyprocess: Add missing test funcion and drop ebuild which was mov... (diff) | |
| download | sci-59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0.tar.gz sci-59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0.tar.bz2 sci-59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0.zip | |
sci-biology/fastqc: version bump, added perl dependency, Apache ant-building does not work still
Package-Manager: portage-2.2.18
Diffstat (limited to 'sci-biology/fastqc')
| -rw-r--r-- | sci-biology/fastqc/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/fastqc/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/fastqc/fastqc-0.11.3.ebuild (renamed from sci-biology/fastqc/fastqc-0.11.2.ebuild) | 8 |
3 files changed, 15 insertions, 2 deletions
diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog index b828a60ff..3510855fa 100644 --- a/sci-biology/fastqc/ChangeLog +++ b/sci-biology/fastqc/ChangeLog @@ -2,6 +2,13 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*fastqc-0.11.3 (30 May 2015) + + 30 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +fastqc-0.11.3.ebuild, -fastqc-0.11.2.ebuild: + sci-biology/fastqc: version bump, added perl dependency, Apache ant-building + does not work still + 05 Mar 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> +files/build.xml, fastqc-0.11.2.ebuild: added build.xml exported by author from Eclipse IDE (it doesn't work under ant diff --git a/sci-biology/fastqc/Manifest b/sci-biology/fastqc/Manifest index c8dd062ca..4e8207292 100644 --- a/sci-biology/fastqc/Manifest +++ b/sci-biology/fastqc/Manifest @@ -1 +1 @@ -DIST fastqc_v0.11.2_source.zip 996798 SHA256 efee48358830f5120b5a39311d5f50352b1476e89bf5ea4ad6ce1ab831ee7eee SHA512 c0443d7b8313b488090832c7697662d6fccbe8bddf42d7941bb8a3f50e55c104cfa06e2edbd0e04c5fc5de02eadd61830ceddf2c944228a1ce9479d846a750b3 WHIRLPOOL 2aeae03c18595a7a56b88f353b2490d7a826aa7130451e3fc05faf111c1aeea67f5ea617225cedc1d11172ee5c3f823b1f0793278ef5910b8bec00468de76ce9 +DIST fastqc_v0.11.3_source.zip 10073593 SHA256 b62b1aea957af9051b30d306183df239b095eac4f8d281478c372b25c61fe44d SHA512 bab27d6997ad6525b7804ba9a3a54eec1cdb835d548c2840ae882334902d12eea4bbff549370669176ade76633a5f1d7dc6f7ee865a25f1a41b525764660b471 WHIRLPOOL 843039e115aa0101e687ad9fe9b40d4e658e96f6dbebe87a9f4074c1f3ea46910f3dac1a3426ec329a194a542580ca16ce5d22c348500453ba357c27f15a7f06 diff --git a/sci-biology/fastqc/fastqc-0.11.2.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild index dadc2881d..d2ae40e59 100644 --- a/sci-biology/fastqc/fastqc-0.11.2.ebuild +++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild @@ -18,6 +18,7 @@ IUSE="" DEPEND="sci-biology/picard >=virtual/jre-1.5:*" RDEPEND="${DEPEND} + dev-lang/perl >=virtual/jdk-1.5:* dev-java/ant-core" @@ -27,11 +28,16 @@ src_prepare(){ cp "${FILESDIR}"/build.xml . || die } +src_compile(){ + ant build || die # TODO: this does not work somehow +} + src_install(){ dobin fastqc run_fastqc.bat dodoc README.txt RELEASE_NOTES.txt # TODO: need to compile java in uk/ac/babraham/FastQC/ # and decide whether jbzip2-0.9.jar is a standard java lib or not - # ignore the sam-1.32.jar, that is likely library already in sci-biology/picard + # ignore the sam-1.103.jar, that is likely library already in sci-biology/picard + # cisd-jhdf5.jar } |