sci-biology/lastz: version bump

Package-Manager: portage-2.2.18

5 files changed, 47 insertions, 47 deletions

diff --git a/sci-biology/lastz/ChangeLog b/sci-biology/lastz/ChangeLog
index 45c889643..eac541589 100644
--- a/sci-biology/lastz/ChangeLog
+++ b/sci-biology/lastz/ChangeLog
@@ -1,7 +1,14 @@
 # ChangeLog for sci-biology/lastz
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*lastz-1.03.66 (02 May 2015)
+
+  02 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +files/lastz-1.03.66-build.patch, +lastz-1.03.66.ebuild,
+  -files/lastz-1.03.34-build.patch, -lastz-1.03.34.ebuild:
+  sci-biology/lastz: version bump
+
   12 Jun 2013; Justin Lecher <jlec@gentoo.org> -lastz-1.02.00.ebuild,
   +lastz-1.03.34.ebuild, +files/lastz-1.03.34-build.patch, metadata.xml:
   Version Bump; fix license; bump to EAPI=5; fix buildsystem
@@ -17,4 +24,3 @@
   16 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   +lastz-1.02.00.ebuild, +metadata.xml:
   initial ebuild
-
diff --git a/sci-biology/lastz/Manifest b/sci-biology/lastz/Manifest
index 68cf4df31..b8f2a76b1 100644
--- a/sci-biology/lastz/Manifest
+++ b/sci-biology/lastz/Manifest
@@ -1 +1 @@
-DIST lastz-1.03.34.tar.gz 716550 SHA256 b831cfb7dabf85e2f9bf33a76641481ede0d18a941c3a72d57d373b018232fbf SHA512 a29d27cd718c99762397f985ad9320e9cec9b288f94b766224f904abaa6793d4557cc253e82f568223c6a256c35e357c51d29ba89a0af3c915a82f27fadaaf1f WHIRLPOOL 4f3939005aaad44042ca219138355c02b95c6e7f182d4f11ad810a27625044a29075815efefb419aa8476be6cd9cf553d0e07f8a59a0a0fc74dd2bba77f1e9bd
+DIST lastz-1.03.66.tar.gz 727104 SHA256 8eb2db3fcf235065a099536f3a41323df25c6643d30b0db3a79f4b2f7430a5d0 SHA512 904c91b4f36ff94805096bd52fe3790801199739a43e5b14d06ceda06b4d38cde8f202b3492245ff5f1efc4d9070f6807fe1e19db802759fe1f23f45133e314d WHIRLPOOL 0440fd08a0a7620e094e68cff746bcbd95f0a6cf31526728f9ad2dd2697cc22ba2fda99865d83504b206d1ca986b2003b614408c0a9275889119804c702885c6
diff --git a/sci-biology/lastz/files/lastz-1.03.34-build.patch b/sci-biology/lastz/files/lastz-1.03.34-build.patch
deleted file mode 100644
index bc3a8c033..000000000
--- a/sci-biology/lastz/files/lastz-1.03.34-build.patch
+++ /dev/null
@@ -1,43 +0,0 @@
- src/Makefile | 11 ++++++-----
- 1 file changed, 6 insertions(+), 5 deletions(-)
-
-diff --git a/src/Makefile b/src/Makefile
-index f628f3c..5bb11bf 100644
---- a/src/Makefile
-+++ b/src/Makefile
-@@ -1,7 +1,7 @@
- include ../make-include.mak
- include version.mak
- 
--CC=gcc
-+CC?=gcc
- 
- # default targets
- 
-@@ -48,7 +48,8 @@ VERSION_FLAGS= \
- 	-DSUBVERSION_REV="\"${SUBVERSION_REV}"\"
- 
- 
--CFLAGS = -O3 ${definedForAll} ${VERSION_FLAGS}
-+CFLAGS ?= -O3 ${definedForAll}
-+CFLAGS += ${VERSION_FLAGS}
- 
- 
- srcFiles = lastz infer_scores \
-@@ -78,13 +79,13 @@ incFiles = lastz.h infer_scores.h \
- 
- 
- lastz: $(foreach part,${srcFiles},${part}.o)
--	$(CC) $(foreach part,${srcFiles},${part}.o) -lm -o $@
-+	$(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}.o) -lm -o $@
- 
- lastz_D: $(foreach part,${srcFiles},${part}_D.o)
--	$(CC) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
-+	$(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
- 
- lastz_32: $(foreach part,${srcFiles},${part}_32.o)
--	$(CC) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
-+	$(CC) $(LDFLAGS) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
- 
- # cleanup
- 
diff --git a/sci-biology/lastz/files/lastz-1.03.66-build.patch b/sci-biology/lastz/files/lastz-1.03.66-build.patch
new file mode 100644
index 000000000..0b9a948d3
--- /dev/null
+++ b/sci-biology/lastz/files/lastz-1.03.66-build.patch
@@ -0,0 +1,37 @@
+--- src/Makefile.old	2015-05-02 15:07:56.169136255 +0200
++++ src/Makefile	2015-05-02 15:10:02.249137955 +0200
+@@ -1,7 +1,7 @@
+ include ../make-include.mak
+ include version.mak
+ 
+-CC=gcc
++CC?=gcc
+ 
+ # default targets
+ 
+@@ -71,7 +71,7 @@
+ 	-DSUBVERSION_REV="\"${SUBVERSION_REV}"\"
+ 
+ 
+-CFLAGS = -O3 ${definedForAll} ${VERSION_FLAGS}
++CFLAGS += ${definedForAll} ${VERSION_FLAGS}
+ 
+ 
+ srcFiles = lastz infer_scores \
+@@ -101,13 +101,13 @@
+ 
+ 
+ lastz: $(foreach part,${srcFiles},${part}.o)
+-	${CC} $(foreach part,${srcFiles},${part}.o) -lm -o $@
++	${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}.o) -lm -o $@
+ 
+ lastz_D: $(foreach part,${srcFiles},${part}_D.o)
+-	${CC} $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
++	${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}_D.o) -lm -o $@
+ 
+ lastz_32: $(foreach part,${srcFiles},${part}_32.o)
+-	${CC} $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
++	${CC} $(LDFLAGS) $(foreach part,${srcFiles},${part}_32.o) -lm -o $@
+ 
+ # cleanup
+ 
diff --git a/sci-biology/lastz/lastz-1.03.34.ebuild b/sci-biology/lastz/lastz-1.03.66.ebuild
index 32364b20c..af89d9912 100644
--- a/sci-biology/lastz/lastz-1.03.34.ebuild
+++ b/sci-biology/lastz/lastz-1.03.66.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $