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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-02-21 12:21:31 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2011-02-21 12:21:31 +0100 |
| commit | 7227ff362b255f8a88cadc725ad2b768aeb5e54b (patch) | |
| tree | c922ec068787dc595182e7b9c587264ddd64c7ce /sci-biology/tgicl | |
| parent | [sci-chemistry/votca-csg] fixed a typo (diff) | |
| download | sci-7227ff362b255f8a88cadc725ad2b768aeb5e54b.tar.gz sci-7227ff362b255f8a88cadc725ad2b768aeb5e54b.tar.bz2 sci-7227ff362b255f8a88cadc725ad2b768aeb5e54b.zip | |
sci-biology/tgicl: make sure we call perl and not perl-5.15.2 directly
(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)
Diffstat (limited to 'sci-biology/tgicl')
| -rw-r--r-- | sci-biology/tgicl/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/tgicl/tgicl-2.1.ebuild | 5 |
2 files changed, 6 insertions, 1 deletions
diff --git a/sci-biology/tgicl/Manifest b/sci-biology/tgicl/Manifest index f7ca60ede..23083cb86 100644 --- a/sci-biology/tgicl/Manifest +++ b/sci-biology/tgicl/Manifest @@ -1,3 +1,3 @@ DIST TGICL-2.1.tar.gz 2925009 RMD160 7374261ccd3329662e4a968944e956d8529269c0 SHA1 011cdfa35b132c76c650eb1c2492083736f9d56f SHA256 02682846db9c28a78f5bcfc4ea715dd9e4de8c68b02474d8088831355a3ec989 -EBUILD tgicl-2.1.ebuild 2442 RMD160 f7a181995a83084f3c9c0883abc918846e60fd69 SHA1 5a04a4a4447a99fb9f6c72f991cb56af32da5aeb SHA256 ecb0ae730c34d2ef4cc26baafb13cb6effabc85284a2fa06595a034149055d33 +EBUILD tgicl-2.1.ebuild 2716 RMD160 42540c178ba67b4ae338e13b7e9454e00c4893fb SHA1 538aaf827a0be2521223a57d1b8e64eeadbaa963 SHA256 c56b4d6a8da075a949eb41ca73a0667a3190b5e262e3e7d2e8543e4a113a5948 MISC metadata.xml 269 RMD160 53c242e331b0a82669ca7913da16dac854ab8dca SHA1 bc75ba3b0f5607ac5f396d3e8a99daf5ded5a7de SHA256 13472fd0615d2b381dbe36666fe1bbf3b1c34770aa409c6101b38741b4586f85 diff --git a/sci-biology/tgicl/tgicl-2.1.ebuild b/sci-biology/tgicl/tgicl-2.1.ebuild index 087a38c96..5871289e1 100644 --- a/sci-biology/tgicl/tgicl-2.1.ebuild +++ b/sci-biology/tgicl/tgicl-2.1.ebuild @@ -41,4 +41,9 @@ src_install(){ einfo "We have to use the mgblast binary provided by upstream because it cannot be compiled against newer ncbi-tools anymore" einfo "We also keep pvmsx binary because the pvmsx package needs pvm3.h header which is probably the one from pvm bundle which is not in portage at all, contact sys-cluster herd" for f in mdust psx sclust tclust nrcl zmsort cap3 formatdb cdbfasta cdbyank; do rm -f "${D}"/usr/bin/$f || die "Cannot delete ${D}"/usr/bin/"$f"; done + + # fix first lines of teh script to use /usr/bin/perl instead of /usr/bin/perl-$version + for f in tgicl tgicl_asm.psx tgicl_asmpta.psx tgicl_cluster.psx; do + sed -i 's@^#!/usr/bin/perl-*@#! /usr/bin/perl@' "${D}"/usr/bin/$f || die "Failed to fix ${D}"/usr/bin/"$f"; + done } |