diff options
| -rw-r--r-- | sci-biology/cutadapt/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/cutadapt/cutadapt-2.10.ebuild | 42 | ||||
| -rw-r--r-- | sci-biology/cutadapt/metadata.xml | 4 |
3 files changed, 47 insertions, 0 deletions
diff --git a/sci-biology/cutadapt/Manifest b/sci-biology/cutadapt/Manifest index ed9f5f70f..f33d6c525 100644 --- a/sci-biology/cutadapt/Manifest +++ b/sci-biology/cutadapt/Manifest @@ -1 +1,2 @@ DIST cutadapt-1.9.1.tar.gz 595412 BLAKE2B 379f8c35f1d91b232d76b359187f6f708a0bb6c026a85a678ab49ce13aba2a536b81a181385cfe6e61a5c6b5bac4f5fa73ff5439fff2493966761eb708f0d207 SHA512 9611f3f12e2c99bf03cca2e921e030cafd91782b40e1204e5dc44e4f8b910e2248ddec7e8d394b40460348e8f195ed4fcebc48c018320ce2c3daa1d1722f39c5 +DIST cutadapt-2.10.tar.gz 282198 BLAKE2B 87784fd092d3417775f3a627d68bea1d3421f6392ae90f65e9b5f231f10a4da8cfacecc8c6fc3cd8420d0255ffc44ec72188bc901d1768f18f3b78077a165314 SHA512 afefb101a25daa071e5945e442de46cd594a6f4ba5915e9d11943280039223ff5d686b358de44f11b6367f203767d97b76fc529eae70b072139e55831189e594 diff --git a/sci-biology/cutadapt/cutadapt-2.10.ebuild b/sci-biology/cutadapt/cutadapt-2.10.ebuild new file mode 100644 index 000000000..e21219dd8 --- /dev/null +++ b/sci-biology/cutadapt/cutadapt-2.10.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) + +inherit distutils-r1 + +DESCRIPTION="Remove adapter sequences from high-throughput sequencing data" +HOMEPAGE="https://github.com/marcelm/cutadapt" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +DEPEND=" + dev-python/dnaio[${PYTHON_USEDEP}] + dev-python/xopen[${PYTHON_USEDEP}] +" +RDEPEND=" + ${PYTHON_DEPS} + ${DEPEND} +" +BDEPEND=" + test? ( + dev-python/cython + dev-python/pytest-mock + dev-python/pytest-timeout + dev-python/sphinx + dev-python/sphinx-issues + ) +" + +distutils_enable_tests pytest + +# needs call to installed cutadapt executable +python_test() { + distutils_install_for_testing + pytest -vv || die "pytest failed with ${EPYTHON}" +} diff --git a/sci-biology/cutadapt/metadata.xml b/sci-biology/cutadapt/metadata.xml index 6099a3fab..6a2aeb852 100644 --- a/sci-biology/cutadapt/metadata.xml +++ b/sci-biology/cutadapt/metadata.xml @@ -5,6 +5,10 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> + <maintainer type="person"> + <email>gentoo@aisha.cc</email> + <name>Aisha Tammy</name> + </maintainer> <maintainer type="project"> <email>sci-biology@gentoo.org</email> <name>Gentoo Biology Project</name> |