diff options
| -rw-r--r-- | profiles/package.mask | 4 | ||||
| -rw-r--r-- | sci-biology/chiron/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/chiron/chiron-0.6.1.1.ebuild | 29 | ||||
| -rw-r--r-- | sci-biology/chiron/metadata.xml | 12 |
4 files changed, 0 insertions, 46 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index 20d20abc8..d39812beb 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -29,7 +29,3 @@ ## app-misc/some-package #--- END OF EXAMPLES --- - -# Andrew Ammerlaan <andrewammerlaan@gentoo.org) (12 Jan 2023) -# Needs bump of PYTHON_COMPAT to at least python3_10 -sci-biology/chiron diff --git a/sci-biology/chiron/Manifest b/sci-biology/chiron/Manifest deleted file mode 100644 index 2cde5a081..000000000 --- a/sci-biology/chiron/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST chiron-0.6.1.1.tar.gz 53281188 BLAKE2B 56c623ec0d2f8970cd03d892d321362145b44890a0384d5209a2bd8c19b22509ec0557e539f021240a447e836ca6cd3531f3c9ac827b6ece715b086fca73d9f3 SHA512 b74e7f3cea9d206bc0c456189ec643de684a866bdb2dd6fd9d05ac11efd2b980d1aa09f7fc2a2aa3d5df56ca60e7a57c23d63e20df3df10f3ab82c5289d8a52f diff --git a/sci-biology/chiron/chiron-0.6.1.1.ebuild b/sci-biology/chiron/chiron-0.6.1.1.ebuild deleted file mode 100644 index 162a03129..000000000 --- a/sci-biology/chiron/chiron-0.6.1.1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..9} ) -DISTUTILS_USE_SETUPTOOLS=rdepend - -inherit distutils-r1 - -DESCRIPTION="A deep neural network basecaller for nanopore sequencing" -HOMEPAGE="https://github.com/haotianteng/chiron - https://www.biorxiv.org/content/early/2017/09/12/179531" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="MPL-2.0" -SLOT="0" -KEYWORDS="~amd64" - -RDEPEND=" - dev-python/h5py[${PYTHON_USEDEP}] - sci-biology/mappy[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - dev-python/tqdm[${PYTHON_USEDEP}] - sci-biology/biopython[${PYTHON_USEDEP}] - dev-python/packaging[${PYTHON_USEDEP}] - sci-libs/tensorflow[${PYTHON_USEDEP}] -" diff --git a/sci-biology/chiron/metadata.xml b/sci-biology/chiron/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/chiron/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> |