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* dev-python/snakemake-interface-common: add ebuildMichael Schubert2024-06-193-0/+39
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/immutables: add ebuildMichael Schubert2024-06-193-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/conda-inject: add ebuildMichael Schubert2024-06-193-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/argparse-dataclass: add ebuildMichael Schubert2024-06-193-0/+36
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/throttler: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/stopit: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/reretry: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/connection_pool: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/multiqc: version bump 1.22.2Michael Schubert2024-06-194-45/+43
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1277 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: drop distutils_enable_tests --installAndrew Ammerlaan2024-06-173-3/+3
| | | | | | TODO: port these packages to pep517, and fix tests Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/imagej: ant-core deprecatedIsrael Hernandez2024-06-172-2/+0
| | | | | | | | | | | | | | Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net> This commit removes dev-java/ant-core from dependencies This has been deprecated, and it gets automatically used with ant2 Latest updates had depclean dev-java/ant-core, and the packages still builds after dependency removal see: https://packages.gentoo.org/packages/dev-java/ant-core Closes: https://github.com/gentoo/sci/pull/1275 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/vector: add 1.4.1, drop 1.4.0Alexander Puck Neuwirth2024-06-112-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-mathematics/pulp: Added pulp version 2.8.0 + python3.12Tomas Fabrizio Orsi2024-06-112-0/+22
| | | | | | Signed-off-by: Tomas Fabrizio Orsi <torsi@fi.uba.ar> Closes: https://github.com/gentoo/sci/pull/1273 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/imagej: add 1.54i, drop 1.54hIsrael Hernandez2024-06-103-10/+10
| | | | | | | | | | | Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net> * This PR bumps imagej to version 1.54i * This PR, also, redirects the icon to the new URL. Old URL hosted on the nih became disabled Closes: https://github.com/gentoo/sci/pull/1272 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/afni: add 24.1.15, 24.1.16Horea Christian2024-06-064-0/+282
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hist: add 2.7.3Alexander Puck Neuwirth2024-06-032-0/+27
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/qgraf: add 4.0.1Alexander Puck Neuwirth2024-06-032-0/+33
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-vcs/datalad-fuse: drop 0.5.1Horea Christian2024-05-301-43/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: drop 24.0.04-r1, 24.0.08-r1, 24.0.08-r2Horea Christian2024-05-304-349/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad-fuse: updated dependencies for python fuse bindingsHorea Christian2024-05-301-0/+32
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/fusepy: new package, add 3.0.1Horea Christian2024-05-293-0/+37
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: correct version annotationHorea Christian2024-05-291-0/+125
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: env variable for AFNI dataHorea Christian2024-05-282-0/+125
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni-datasets: new package, add 20240503Horea Christian2024-05-283-0/+33
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/afni: update DESCRIPTION, HOMEPAGEHorea Christian2024-05-242-12/+12
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/VelvetOptimiser: fix dependency on perlAndrew Ammerlaan2024-05-221-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-biology/nilearn: updated dependency nameHorea Christian2024-05-222-2/+2
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-physics/madgraph5: new package, add 3.5.3Alexander Puck Neuwirth2024-05-164-0/+170
| | | | | | Closes: https://github.com/gentoo/sci/pull/1270 Co-authored-by: Andrew Nowa Ammerlaan <andrewammerlaan@gentoo.org> Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-vcs/datalad: add 1.0.2Horea Christian2024-05-132-0/+80
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad-fuse: new package, add 0.5.1Horea Christian2024-05-104-0/+75
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/aiohttp-retry: new package, add 2.8.3Horea Christian2024-05-093-0/+48
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* profiles: unmasked samri, heudiconvHorea Christian2024-05-091-4/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* profiles: unmasked nipypeHorea Christian2024-05-091-2/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/prov: new package, add 2.0.0Horea Christian2024-05-093-0/+58
| | | | | | | Brought back here after deprecation from ::gentoo, fixed some of the issues with it. Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/methodtools: new package, add 0.4.7Horea Christian2024-05-094-0/+50
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* */*: drop sourceforge mirrorAndrew Ammerlaan2024-05-079-11/+11
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/wirerope: new package, add 0.4.7Horea Christian2024-05-064-0/+53
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/linesep: new package, add 0.5.0Horea Christian2024-05-064-0/+54
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-physics/jaxodraw-bin: new package, add 2.1.0Alexander Puck Neuwirth2024-05-063-0/+72
| | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1269
* dev-python/hist: new package, add 2.7.2Alexander Puck Neuwirth2024-05-063-0/+46
| | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1259
* dev-python/histoprint: new package, add 2.4.0Alexander Puck Neuwirth2024-05-063-0/+40
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/pyhf: add 0.7.5Alexander Puck Neuwirth2024-04-292-0/+38
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/vector: add 1.4.0Alexander Puck Neuwirth2024-04-252-0/+35
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/cernlib: Fix test failuresAlexander Puck Neuwirth2024-04-241-2/+9
| | | | | Closes: https://github.com/gentoo/sci/pull/1268 Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* package.mask: mask multiqc and nipypeAndrew Ammerlaan2024-04-241-0/+13
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/cernlib: update ManifestAlexander Puck Neuwirth2024-04-231-1/+0
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/particle: add 0.24.0Alexander Puck Neuwirth2024-04-232-0/+45
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/cernlib: Drop var MY_PAlexander Puck Neuwirth2024-04-232-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/oneloop: add bitbucket upstream metadataAlexander Puck Neuwirth2024-04-172-4/+4
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* sci-physics/mcfm: inherit fortran-2Alexander Puck Neuwirth2024-04-171-4/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>