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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit java-pkg-2
DESCRIPTION="DNA contig sequence comparison tool supplementing Artemis"
HOMEPAGE="https://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act"
SRC_URI="ftp://ftp.sanger.ac.uk/pub/resources/software/act/v17/v${PV}/sact-v${PV}.jar
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v17/v${PV}/act-v${PV}.jar
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_manual_complete.pdf -> ${P}.manual.pdf
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v13/act_html_build.zip -> ${P}.html_build.zip
ftp://ftp.sanger.ac.uk/pub/resources/software/act/v17/v${PV}/release_notes.txt"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
BDEPEND="app-arch/unzip"
RDEPEND="${DEPEND}
>=virtual/jre-1.8:*"
S="${WORKDIR}"
src_unpack(){
unzip "${DISTDIR}"/${P}.html_build.zip || die
}
src_prepare(){
default
cd act_html_build || die
rm -f .DS_Store HTML.index HTML.manifest || die
}
src_install(){
java-pkg_dojar "${DISTDIR}"/*.jar
dodoc "${DISTDIR}"/${P}.manual.pdf "${DISTDIR}"/release_notes.txt
docinto html
dodoc act_html_build/*
}
pkg_postinst(){
einfo "For BAM file support please install sci-biology/BamView"
einfo "You may find interesting the additional web resources:"
einfo "http://www.webact.org/WebACT"
einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"
}
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