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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{10..13} )
DISTUTILS_USE_PEP517=setuptools
inherit cmake distutils-r1 toolchain-funcs
GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
DESCRIPTION="Analysis of Functional Neuroimages by NIMH"
HOMEPAGE="https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/"
SRC_URI="
https://github.com/afni/afni/archive/refs/tags/AFNI_${PV}.tar.gz -> ${P}.gh.tar.gz
https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz -> nifti-${NIFTI_HASH}.tar.gz
https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz -> gifti-${GIFTI_HASH}.tar.gz
"
S="${WORKDIR}/afni-AFNI_${PV}"
LICENSE="GPL-3+"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="test whirlgif"
RESTRICT="!test? ( test )"
RDEPEND="
dev-build/ninja
dev-libs/expat
dev-libs/glib:2
dev-libs/libf2c
media-libs/freeglut
media-libs/glu
media-libs/netpbm
media-libs/qhull
media-video/mpeg-tools
sci-biology/afni-datasets
sci-libs/gsl
sci-libs/gts
sys-devel/llvm:*
sys-libs/libomp
virtual/jpeg-compat:62
x11-libs/libGLw
x11-libs/libXft
x11-libs/libXi
x11-libs/libXmu
x11-libs/libXpm
x11-libs/libXt
x11-libs/motif[-static-libs]
"
DEPEND="
${RDEPEND}
app-shells/tcsh
"
# Prospectively:
#Update jpeg-compat to virtual/jpeg:0
# look for xmhtlm
#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
src_prepare() {
tar xf "${DISTDIR}/nifti-${NIFTI_HASH}.tar.gz" || die
tar xf "${DISTDIR}/gifti-${GIFTI_HASH}.tar.gz" || die
cmake_src_prepare
default
}
src_configure() {
if use !whirlgif; then
eapply "${FILESDIR}/${PN}-24.0.04-whirlgif.patch"
fi
# Fix AFNI version, no better way seemed to work
sed -i -e "s/GIT_REPO_VERSION \"99\.99\.99\"/GIT_REPO_VERSION ${PV}/g" cmake/get_git_repo_version.cmake
export CFLAGS="-pthread ${CFLAGS}"
local mycmakeargs=(
-DLIBDIR=/usr/$(get_libdir)
-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
-DCOMP_COREBINARIES=ON
-DUSE_SYSTEM_NIFTI=OFF
-DUSE_SYSTEM_GIFTI=OFF
-DUSE_SYSTEM_XMHTML=OFF
-DUSE_SYSTEM_GTS=ON
-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/nifti_clib-${NIFTI_HASH}"
-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/gifti_clib-${GIFTI_HASH}"
-DCOMP_GUI=ON
-DCOMP_PLUGINS=ON
-DUSE_OMP=ON
-DCOMP_PYTHON=OFF
-DUSE_SYSTEM_F2C=ON
)
tc-export CC
cmake_src_configure
}
src_compile() {
cmake_src_compile
pushd src/python_scripts
distutils-r1_src_compile
popd
}
src_install() {
cmake_src_install
pushd src/python_scripts
distutils-r1_src_install
popd
cd "${D}"
rm usr/bin/mpeg_encode
doenvd "${FILESDIR}/97afni"
}
pkg_postinst() {
echo
einfo "Please run the following commands if you"
einfo "intend to use afni binaries from an existing shell:"
einfo "source /etc/profile"
echo
}
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