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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit toolchain-funcs versionator
MY_PV=$(replace_all_version_separators '-')
DESCRIPTION="Cis-eLement OVERrepresentation: Detection of functional DNA motifs"
HOMEPAGE="http://zlab.bu.edu/clover/"
SRC_URI="
http://zlab.bu.edu/~mfrith/downloads/${PN}-${MY_PV}.tar.gz
http://zlab.bu.edu/clover/jaspar2009core"
LICENSE="freedist"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
S="${WORKDIR}/${PN}-${MY_PV}"
src_prepare() {
sed \
-e "s:g++:$(tc-getCXX) \$(LDFLAGS):; s:-Wall -O3:${CFLAGS}:" \
-i Makefile || die "sed failed"
}
src_install() {
dobin clover
insinto /usr/share/${PN}
doins "${DISTDIR}/jaspar2009core"
}
pkg_postinst() {
einfo "The motif library jaspar2009core has been installed in"
einfo " /usr/share/clover/jaspar2009core"
einfo "You can pass this library to clover for motif search, or use your own library."
}
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