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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{8..10} )
inherit distutils-r1
DESCRIPTION="Use BED and GFF files from python using BEDtools"
HOMEPAGE="https://daler.github.io/pybedtools"
SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64 ~x86"
# ModuleNotFoundError: No module named 'pybedtools.cbedtools'
RESTRICT="test"
RDEPEND="
sci-biology/bedtools
sci-biology/pysam[${PYTHON_USEDEP}]
dev-python/six[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
"
BDEPEND="dev-python/cython[${PYTHON_USEDEP}]"
# TODO: fix docs building
# ModuleNotFoundError: No module named 'pybedtools.cbedtools'
# even if pybedtools is installed
#distutils_enable_sphinx docs/source
distutils_enable_tests pytest
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