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| author |   Thomas Sachau <tommy@gentoo.org> | 2008-09-08 19:44:48 +0000 |
|---|---|---|
| committer | Thomas Sachau <tommy@gentoo.org> | 2008-09-08 19:44:48 +0000 |
| commit | 35b822b2f779e22f78ab350f547470bbffb4bca9 (patch) | |
| tree | 2e4251e8edf515f41263ba7ff9379512556a69b8 /sci-biology | |
| parent | sci-biology/glimmer: In gentoo-x86 (diff) | |
| download | sunrise-reviewed-35b822b2f779e22f78ab350f547470bbffb4bca9.tar.gz sunrise-reviewed-35b822b2f779e22f78ab350f547470bbffb4bca9.tar.bz2 sunrise-reviewed-35b822b2f779e22f78ab350f547470bbffb4bca9.zip | |
sci-biology/glimmerhmm: In gentoo-x86
svn path=/sunrise/; revision=7031
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/glimmerhmm/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/glimmerhmm/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 44 | ||||
| -rw-r--r-- | sci-biology/glimmerhmm/metadata.xml | 5 |
4 files changed, 0 insertions, 65 deletions
diff --git a/sci-biology/glimmerhmm/ChangeLog b/sci-biology/glimmerhmm/ChangeLog deleted file mode 100644 index a0ce06630..000000000 --- a/sci-biology/glimmerhmm/ChangeLog +++ /dev/null @@ -1,12 +0,0 @@ -# ChangeLog for sci-biology/glimmerhmm -# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 15 Mar 2007; Christian Faulhammer <opfer@gentoo.org> - glimmerhmm-3.0.1.ebuild: - Orthographic sex-up - - 14 Mar 2007; AK <gentoo@horizon.ath.cx> +glimmerhmm-3.0.1.ebuild, - +metadata.xml: - new package sci-biology/glimmerhmm (bug 170964) - diff --git a/sci-biology/glimmerhmm/Manifest b/sci-biology/glimmerhmm/Manifest deleted file mode 100644 index 0ee23de0e..000000000 --- a/sci-biology/glimmerhmm/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -DIST GlimmerHMM-3.0.1.tar.gz 45475952 RMD160 273cb74458e3f444cd9f8ca9f6618335aea5465f SHA1 6caf10a3fb79660e48d88560869dee0394961f1a SHA256 c956838a398483003ff1af867c65aca082b82340d8b302b9ada77d1b246954e4 -EBUILD glimmerhmm-3.0.1.ebuild 1209 RMD160 6793f2915f21cae7adbe12600fc92ead026b5694 SHA1 a0a2af322513410f59833004f0add9709f8d0cde SHA256 0dc071e77aea3aeb7d0a1a561ee36961fbf94d0f2859e9a4fdfa1c7f09d8c0ab -MISC ChangeLog 364 RMD160 0bc9938c83818eb6865ede419df75e7df6ab68a4 SHA1 b86f62f8e1e09eed4cbf25cfac333602d3bfa417 SHA256 a43485f2129b6d5330107ef9cf26acfd44533a0a279748d8bda858e0935b8077 -MISC metadata.xml 170 RMD160 645927a396fdc21cdeb089fe42c5397332420ea6 SHA1 ac7f48a14fec325926f9ce1be8fbf1f311b4f2e4 SHA256 d797a2ec6f9dc516c9f9c1a758ee87ad3e8c43101b5dc76c2f872d5bd4639b42 diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild deleted file mode 100644 index 636cbbd66..000000000 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -MY_PN="GlimmerHMM" - -DESCRIPTION="An eukaryotic gene finding system from TIGR" -HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" -SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_PN}-${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="~x86" - -DEPEND="" -RDEPEND="" - -S=${WORKDIR}/${MY_PN} - -src_compile() { - sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' train/trainGlimmerHMM || die "sed failed" - sed -i 's/^CFLAGS[ ]*=.*//' */makefile - - cd sources - emake || die "emake failed in sources" - cd "${S}/train" || die "failed to cd" - emake || die "emake failed in train" -} - -src_install() { - dobin sources/glimmerhmm train/trainGlimmerHMM - - insinto /usr/share/${PN}/lib - doins train/*.pm - insinto /usr/share/${PN}/models - doins -r trained_dir/* - insinto /usr/share/${PN}/training_utils - insopts -m755 - doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} - - dodoc README.first train/readme.train -} diff --git a/sci-biology/glimmerhmm/metadata.xml b/sci-biology/glimmerhmm/metadata.xml deleted file mode 100644 index 7e3286984..000000000 --- a/sci-biology/glimmerhmm/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> -<herd>maintainer-wanted</herd> -</pkgmetadata> |