dev-lang/R: drop 4.2.3

Signed-off-by: David Seifert <soap@gentoo.org>

6 files changed, 0 insertions, 448 deletions

diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index 66ca1dcf1a07..92c9fed1a39b 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,3 +1,2 @@
-DIST R-4.2.3.tar.gz 34010655 BLAKE2B 688403c693de348bdc404c0ebc2df08d3415db216f6017beca8c0408dc70830239ba26ff89f020a249c8af6471363ed742f52c816da84aac8161ec4a522df405 SHA512 060bb4e1d1f1a5a0383a3b4372ac9247c0a20285020da17cebeb40ddc54da12d5f369ea243ea04d2c6970986fe22b3f9c37fbdfb3405cd8aa4f2353091ea9c5c
 DIST R-4.3.0.tar.gz 34821768 BLAKE2B 3505c8357419355fddb8aadbf0952c492e3e38d649d6261478d6187c94ff71110089ec0933a31dd2f7258e58a1d0864a68cb4d7b6cdefc54e5add55d0d62db10 SHA512 7f9bc8360818d7fdf05e26a4213df01468669514a4c2ad62dee358f53dcfa05a71ee72241db91fed59574c26d7caee5d3e0717637e1666daec99446e42c07813
 DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.3.ebuild b/dev-lang/R/R-4.2.3.ebuild
deleted file mode 100644
index 9f94b563f46b..000000000000
--- a/dev-lang/R/R-4.2.3.ebuild
+++ /dev/null
@@ -1,248 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion:
-#   https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
-	mirror://cran/src/base/R-4/${P}.tar.gz
-	https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 ~loong sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
-	png? ( || ( cairo X ) )
-	jpeg? ( || ( cairo X ) )
-	tiff? ( || ( cairo X ) )"
-RESTRICT="
-	minimal? ( test )
-	!test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-DEPEND="
-	app-arch/bzip2
-	app-arch/xz-utils
-	app-text/ghostscript-gpl
-	dev-libs/libpcre2:=
-	>=dev-libs/tre-0.8.0_p20210321[approx]
-	net-misc/curl
-	virtual/blas
-	sys-libs/zlib[minizip]
-	|| (
-		sys-apps/coreutils
-		app-misc/realpath
-	)
-	cairo? (
-		x11-libs/cairo:=[X=]
-		x11-libs/pango:=
-	)
-	icu? ( dev-libs/icu:= )
-	jpeg? ( media-libs/libjpeg-turbo:= )
-	kernel_linux? ( net-libs/libtirpc )
-	lapack? ( virtual/lapack )
-	perl? ( dev-lang/perl )
-	png? ( media-libs/libpng:= )
-	readline? ( sys-libs/readline:= )
-	tiff? ( media-libs/tiff:= )
-	tk? ( dev-lang/tk:= )
-	X? (
-		x11-libs/libXmu
-		x11-libs/libXt
-	)"
-RDEPEND="${DEPEND}
-	java? ( >=virtual/jre-1.8:* )"
-BDEPEND="
-	virtual/pkgconfig
-	doc? (
-		virtual/latex-base
-		dev-texlive/texlive-fontsrecommended
-	)
-	test? ( virtual/latex-base )"
-
-PATCHES=(
-	"${FILESDIR}"/R-3.4.1-parallel.patch
-	"${FILESDIR}"/R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
-	"${FILESDIR}"/R-3.6.2-no-gzip-doc.patch
-	"${FILESDIR}"/R-4.2.2-browser-pdf-prefs.patch
-	"${FILESDIR}"/R-4.2.2-isspace-without-readline.patch
-	"${FILESDIR}"/R-4.2.2-parallel-rmath-h-install.patch
-	"${FILESDIR}"/R-4.2.3-curl-8.patch
-)
-
-pkg_pretend() {
-	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
-	if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
-		tc-check-openmp
-		FORTRAN_NEED_OPENMP=1
-	fi
-
-	fortran-2_pkg_setup
-
-	# avoid using existing R installation
-	unset R_HOME
-}
-
-src_prepare() {
-	default
-
-	# fix packages.html for doc (gentoo bug #205103)
-	sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
-		-i src/library/tools/R/Rd.R || die
-
-	# fix Rscript path when installed (gentoo bug #221061)
-	sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
-		-i src/unix/Makefile.in || die "sed unix Makefile failed"
-
-	# fix HTML links to manual (gentoo bug #273957)
-	sed -e 's:\.\./manual/:manual/:g' \
-		-i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
-	use lapack &&
-		export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
-	use perl &&
-		export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
-	# don't search /usr/local
-	sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
-	# Fix for Darwin (macOS)
-	if use prefix; then
-		if [[ ${CHOST} == *-darwin* ]] ; then
-			sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
-				-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
-				-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
-				-e "/SHLIB_EXT/s/\.so/.dylib/" \
-				-i configure.ac || die
-			# sort of "undo" 2.14.1-rmath-shared.patch
-			sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
-				-i src/nmath/standalone/Makefile.in || die
-		else
-			append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
-		fi
-	fi
-
-	AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
-	filter-ldflags -Wl,-Bdirect -Bdirect
-
-	econf \
-		--enable-byte-compiled-packages \
-		--enable-R-shlib \
-		--disable-R-framework \
-		--disable-R-static-lib \
-		--with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
-		rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
-		--with-system-tre \
-		$(use_enable java) \
-		$(use_enable lto lto R) \
-		$(use_enable nls) \
-		$(use_enable openmp) \
-		$(use_enable profile R-profiling) \
-		$(use_enable profile memory-profiling) \
-		$(use_with cairo) \
-		$(use_with icu ICU) \
-		$(use_with jpeg jpeglib) \
-		$(use_with lapack) \
-		$(use_with !minimal recommended-packages) \
-		$(use_with png libpng) \
-		$(use_with readline) \
-		$(use_with tiff libtiff) \
-		$(use_with tk tcltk) \
-		$(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
-		$(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
-		$(use_with X x)
-}
-
-src_compile() {
-	export VARTEXFONTS="${T}"/fonts
-	emake AR="$(tc-getAR)"
-	emake -C src/nmath/standalone shared AR="$(tc-getAR)"
-	use doc && emake info pdf
-}
-
-src_install() {
-	default
-	emake -C src/nmath/standalone DESTDIR="${D}" install
-
-	if use doc; then
-		emake DESTDIR="${D}" install-info install-pdf
-		dosym ../manual /usr/share/doc/${PF}/html/manual
-	fi
-
-	newenvd - 99R <<-_EOF_
-		LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
-		R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
-	_EOF_
-
-	newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
-	# The buildsystem has a different understanding of install_names than
-	# we require.  Since it builds modules like shared objects (wrong), many
-	# objects (all modules) get an incorrect install_name.  Fixing the build
-	# system here is not really trivial.
-	if [[ ${CHOST} == *-darwin* ]] ; then
-		local mod
-		pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
-		for mod in $(find . -name "*.dylib") ; do
-			mod=${mod#./}
-			install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
-		done
-		popd >/dev/null || die
-	fi
-
-	# Users are encouraged to access some of the the R documentation
-	# interactively, through functions like "contributors()" that
-	# tries to open the "AUTHORS" file. Other files can be accessed
-	# by name with RShowDoc(), and the documentation for e.g. license()
-	# and RShowDoc() suggests a few of these names. Here we try to
-	# collect as many names as possible that a user might actually
-	# try to view through R, because if we don't decompress them,
-	# then R doesn't know what to do with 'em. Bug #556706.
-	local INTERACTIVE_DOCS=(
-		AUTHORS
-		COPYING
-		FAQ
-		NEWS
-		THANKS
-	)
-
-	# Other data sources that are shipped as "documentation," but which
-	# need to be accessible via their original unmolested filenames.
-	local INTERACTIVE_DATA=(
-		BioC_mirrors.csv
-		CRAN_mirrors.csv
-		KEYWORDS.db
-		NEWS.rds
-	)
-
-	local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
-	for f in "${NOCOMPRESS_DOCS[@]}"; do
-		docompress -x /usr/share/doc/${PF}/${f}
-	done
-
-	# Finally, an extra copy of this started showing up at some point...
-	rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
-}
-
-pkg_postinst() {
-	if use java; then
-		einfo "Re-initializing java paths for ${P}"
-		R CMD javareconf
-	fi
-}
diff --git a/dev-lang/R/files/R-4.2.2-browser-pdf-prefs.patch b/dev-lang/R/files/R-4.2.2-browser-pdf-prefs.patch
deleted file mode 100644
index b5a953cb6057..000000000000
--- a/dev-lang/R/files/R-4.2.2-browser-pdf-prefs.patch
+++ /dev/null
@@ -1,95 +0,0 @@
-From 6e48ab8b5006f3fdd8ef08f3f86406a02eabdc80 Mon Sep 17 00:00:00 2001
-From: Michael Orlitzky <michael@orlitzky.com>
-Date: Mon, 12 Sep 2022 08:31:46 -0400
-Subject: [PATCH 1/3] m4/R.m4: prefer xdg-open for R_BROWSER and R_PDFVIEWER.
-
-The xdg-open utility (if it is present) will launch the user's
-preferred browsr or PDF viewer when fed an HTML page or a PDF
-document, respectively. It therefore makes sense to prefer it over
-(for example) firefox, which may be installed but not the user's
-preferred browser.
----
- m4/R.m4 | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/m4/R.m4 b/m4/R.m4
-index bdcfbea..c5052e7 100644
---- a/m4/R.m4
-+++ b/m4/R.m4
-@@ -237,7 +237,7 @@ fi])
- ## xdg-open is the freedesktop.org interface to kfmclient/gnome-open
- AC_DEFUN([R_PROG_BROWSER],
- [if test -z "${R_BROWSER}"; then
--  AC_PATH_PROGS(R_BROWSER, [firefox mozilla galeon opera xdg-open kfmclient gnome-moz-remote open])
-+  AC_PATH_PROGS(R_BROWSER, [xdg-open firefox mozilla galeon opera kfmclient gnome-moz-remote open])
- fi
- if test -z "${R_BROWSER}"; then
-   warn_browser="I could not determine a browser"
-@@ -255,7 +255,7 @@ AC_SUBST(R_BROWSER)
- ## the FreeBSD acroread port.
- AC_DEFUN([R_PROG_PDFVIEWER],
- [AC_PATH_PROGS(R_PDFVIEWER,
--               [${R_PDFVIEWER} acroread acroread4 xdg-open evince xpdf gv gnome-gv ggv okular kpdf open gpdf kghostview])
-+               [${R_PDFVIEWER} xdg-open acroread acroread4 evince xpdf gv gnome-gv ggv okular kpdf open gpdf kghostview])
- if test -z "${R_PDFVIEWER}"; then
-   warn_pdfviewer="I could not determine a PDF viewer"
-   AC_MSG_WARN([${warn_pdfviewer}])
--- 
-2.35.1
-
-From 4e50ed9c976a4422a6d431d3d078164948f26bda Mon Sep 17 00:00:00 2001
-From: Michael Orlitzky <michael@orlitzky.com>
-Date: Mon, 12 Sep 2022 08:36:41 -0400
-Subject: [PATCH 2/3] m4/R.m4: add epiphany, lynx, and links to the R_BROWSER
- search list.
-
-The epiphany browser is today one of the more popular ones, being the
-"official" GNOME browser. And lynx and links are nice text-based
-fallbacks.
----
- m4/R.m4 | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/m4/R.m4 b/m4/R.m4
-index c5052e7..e99b0f9 100644
---- a/m4/R.m4
-+++ b/m4/R.m4
-@@ -237,7 +237,7 @@ fi])
- ## xdg-open is the freedesktop.org interface to kfmclient/gnome-open
- AC_DEFUN([R_PROG_BROWSER],
- [if test -z "${R_BROWSER}"; then
--  AC_PATH_PROGS(R_BROWSER, [xdg-open firefox mozilla galeon opera kfmclient gnome-moz-remote open])
-+  AC_PATH_PROGS(R_BROWSER, [xdg-open firefox mozilla epiphany galeon opera kfmclient gnome-moz-remote open lynx links])
- fi
- if test -z "${R_BROWSER}"; then
-   warn_browser="I could not determine a browser"
--- 
-2.35.1
-
-From 719294ed2548f79ab6a5861662716d853284f4d7 Mon Sep 17 00:00:00 2001
-From: Michael Orlitzky <michael@orlitzky.com>
-Date: Mon, 12 Sep 2022 08:38:03 -0400
-Subject: [PATCH 3/3] m4/R.m4: add atril to the R_PDFVIEWER list.
-
-Atril is the PDF viewer for the MATE desktop, essentially a fork of
-the gnome-2.x evince viewer.
----
- m4/R.m4 | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/m4/R.m4 b/m4/R.m4
-index e99b0f9..7e04ced 100644
---- a/m4/R.m4
-+++ b/m4/R.m4
-@@ -255,7 +255,7 @@ AC_SUBST(R_BROWSER)
- ## the FreeBSD acroread port.
- AC_DEFUN([R_PROG_PDFVIEWER],
- [AC_PATH_PROGS(R_PDFVIEWER,
--               [${R_PDFVIEWER} xdg-open acroread acroread4 evince xpdf gv gnome-gv ggv okular kpdf open gpdf kghostview])
-+               [${R_PDFVIEWER} xdg-open acroread acroread4 evince atril xpdf gv gnome-gv ggv okular kpdf open gpdf kghostview])
- if test -z "${R_PDFVIEWER}"; then
-   warn_pdfviewer="I could not determine a PDF viewer"
-   AC_MSG_WARN([${warn_pdfviewer}])
--- 
-2.35.1
-
diff --git a/dev-lang/R/files/R-4.2.2-isspace-without-readline.patch b/dev-lang/R/files/R-4.2.2-isspace-without-readline.patch
deleted file mode 100644
index 0b32bef1352b..000000000000
--- a/dev-lang/R/files/R-4.2.2-isspace-without-readline.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-From 6e36141598b78add7fb841480260b0a57ae79330 Mon Sep 17 00:00:00 2001
-From: smeyer <smeyer@00db46b3-68df-0310-9c12-caf00c1e9a41>
-Date: Wed, 26 Oct 2022 08:22:41 +0000
-Subject: [PATCH] avoid implicit declaration of 'isspace' --without-readline
-
-git-svn-id: https://svn.r-project.org/R/trunk@83178 00db46b3-68df-0310-9c12-caf00c1e9a41
----
- src/unix/sys-std.c | 1 +
- 1 file changed, 1 insertion(+)
-
-diff --git a/src/unix/sys-std.c b/src/unix/sys-std.c
-index 7b93d63884a..f95ff0cf7b3 100644
---- a/src/unix/sys-std.c
-+++ b/src/unix/sys-std.c
-@@ -1339,6 +1339,7 @@ Rstd_ShowFiles(int nfile,		/* number of files */
-     */
- 
- 
-+#include <ctype.h>  /* for isspace */
- 
- int attribute_hidden Rstd_ChooseFile(int _new, char *buf, int len)
- {
diff --git a/dev-lang/R/files/R-4.2.2-parallel-rmath-h-install.patch b/dev-lang/R/files/R-4.2.2-parallel-rmath-h-install.patch
deleted file mode 100644
index 756ec8ff5428..000000000000
--- a/dev-lang/R/files/R-4.2.2-parallel-rmath-h-install.patch
+++ /dev/null
@@ -1,23 +0,0 @@
-From ee1428e77095e52a7396fa7b455f63b7c5b9495b Mon Sep 17 00:00:00 2001
-From: kalibera <kalibera@00db46b3-68df-0310-9c12-caf00c1e9a41>
-Date: Tue, 27 Dec 2022 11:21:33 +0000
-Subject: [PATCH] Declare dependency to ensure include dir exists (PR#17743).
-
-git-svn-id: https://svn.r-project.org/R/trunk@83504 00db46b3-68df-0310-9c12-caf00c1e9a41
----
- src/nmath/standalone/Makefile.in | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/src/nmath/standalone/Makefile.in b/src/nmath/standalone/Makefile.in
-index 68b45006155..946795a0439 100644
---- a/src/nmath/standalone/Makefile.in
-+++ b/src/nmath/standalone/Makefile.in
-@@ -151,7 +151,7 @@ install-strip: installdirs install-header install-pc
- 	fi
- 	@!(test -f libRmath.a) || $(SHELL) $(top_srcdir)/tools/copy-if-change libRmath.a $(DESTDIR)$(libdir)/libRmath.a
- 
--install-header:
-+install-header: installdirs
- 	@(cd ../../include; $(MAKE) Rmath.h)
- @WANT_R_FRAMEWORK_FALSE@	@$(SHELL) $(top_srcdir)/tools/copy-if-change ../../include/Rmath.h $(DESTDIR)$(includedir)/Rmath.h
- @WANT_R_FRAMEWORK_TRUE@	@$(SHELL) $(top_srcdir)/tools/copy-if-change ../../include/Rmath.h $(R_FRAMEWORK_DIR)/Versions/$(FW_VERSION)/Resources/include/Rmath.h
diff --git a/dev-lang/R/files/R-4.2.3-curl-8.patch b/dev-lang/R/files/R-4.2.3-curl-8.patch
deleted file mode 100644
index 92ee3b0d5702..000000000000
--- a/dev-lang/R/files/R-4.2.3-curl-8.patch
+++ /dev/null
@@ -1,59 +0,0 @@
-https://bugs.gentoo.org/902993
-
---- a/configure
-+++ b/configure
-@@ -48533,7 +48533,7 @@
- done
- 
- if test "x${have_libcurl}" = "xyes"; then
--{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking if libcurl is version 7 and >= 7.28.0" >&5
-+{ printf "%s\n" "$as_me:${as_lineno-$LINENO}: checking if libcurl is version 7 and >= 7.28.0 or version 8" >&5
- printf %s "checking if libcurl is version 7 and >= 7.28.0... " >&6; }
- if test ${r_cv_have_curl728+y}
- then :
-@@ -48551,8 +48551,10 @@
- int main(int argc, const char * argv[])
- {
- #ifdef LIBCURL_VERSION_MAJOR
--#if LIBCURL_VERSION_MAJOR > 7
-+#if LIBCURL_VERSION_MAJOR > 8
-   exit(1);
-+#elif LIBCURL_VERSION_MAJOR == 8
-+  exit(0);
- #elif LIBCURL_VERSION_MAJOR == 7 && LIBCURL_VERSION_MINOR >= 28
-   exit(0);
- #else
---- a/m4/R.m4
-+++ b/m4/R.m4
-@@ -4300,15 +4300,17 @@
- AC_CHECK_HEADERS(curl/curl.h, [have_libcurl=yes], [have_libcurl=no])
- 
- if test "x${have_libcurl}" = "xyes"; then
--AC_CACHE_CHECK([if libcurl is version 7 and >= 7.28.0], [r_cv_have_curl728],
-+AC_CACHE_CHECK([if libcurl is version 7 and >= 7.28.0 or verion 8], [r_cv_have_curl728_8],
- [AC_RUN_IFELSE([AC_LANG_SOURCE([[
- #include <stdlib.h>
- #include <curl/curl.h>
- int main(int argc, const char * argv[]) 
- {
- #ifdef LIBCURL_VERSION_MAJOR
--#if LIBCURL_VERSION_MAJOR > 7
-+#if LIBCURL_VERSION_MAJOR > 8
-   exit(1);
-+#elif LIBCURL_VERSION_MAJOR == 8
-+  exit(0);
- #elif LIBCURL_VERSION_MAJOR == 7 && LIBCURL_VERSION_MINOR >= 28
-   exit(0);
- #else
-@@ -4318,9 +4320,9 @@
-   exit(1);
- #endif
- }
--]])], [r_cv_have_curl728=yes], [r_cv_have_curl728=no], [r_cv_have_curl728=no])])
-+]])], [r_cv_have_curl728_8=yes], [r_cv_have_curl728_8=no], [r_cv_have_curl728_8=no])])
- fi
--if test "x${r_cv_have_curl728}" = xno; then
-+if test "x${r_cv_have_curl728_8}" = xno; then
-   have_libcurl=no
- fi
-