dev-python/scipy: Bump to 1.9.3

Signed-off-by: Michał Górny <mgorny@gentoo.org>

2 files changed, 108 insertions, 0 deletions

diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest
index a6f36eba71a1..63506ce1e5bd 100644
--- a/dev-python/scipy/Manifest
+++ b/dev-python/scipy/Manifest
@@ -1,5 +1,6 @@
 DIST scipy-1.8.1.tar.gz 38196215 BLAKE2B 180ae646adba2031a4bf99cd4feefe652b8e340110b3b2872e61aa1083054aadf369c7e3b3e3fd8fb71fcd831c95841d2dadd1c71e35e5f7d95800e5551173f0 SHA512 f6fc71c209991fe82baa4b10d8ade0deb1057f6f5942a91dfb7ae45f3eb78a4535efa2861badf5e2d37239fa99dbd99de760aa7e4854b95991ade0263004e7ea
 DIST scipy-1.9.1.tar.gz 42019478 BLAKE2B aa7f9e8f354d2c73cfeb0e349562279ec323e6c16641c82c47080108d21f385acb1431c1f072e454a043f56e8fd708778fc34c0eddaceedca979f40b6b11e358 SHA512 1378a24c59b66e2818929acd015fe5408cdd57926d96b7b909d5eb7e2bb6bae942e8fe802f107c8b0901af9873b8e24461624ca0917867e24bb50c7d28e09e71
 DIST scipy-1.9.2.tar.gz 42068300 BLAKE2B 0962115990a12339d8b87eabbee02d52a52e57259fbe2e74884fa2f08d66d8b7505f84561f643b539603bc8bf4ef3bf73c3d908453fbb0c99f732c3a81f8a328 SHA512 5f8667aa66aa0b5fad689d960f742874ce09f830bfd5aa241917526f153fbc09c7f709bc84113f83283fcbb8a47113eb215478d9c3473f76d8f7dbf0989429a2
+DIST scipy-1.9.3.tar.gz 42075414 BLAKE2B f19e829d26a5673cccb69bce43a9142637f42a9ec462a3fd2ea44b62564cff6fb27a4deaccc59e0e738cc0c997b0a7de948bf9f2db6fa7896323405a072e0111 SHA512 119f9a5e1ce3b4268ba38a0eb82dff78837593d9a5c5e464663925a4b3b1de060201fe568236e19ed0996a045754333c580e181c4cdec2cc707e57060f59364e
 DIST scipy-html-1.8.1.zip 37060661 BLAKE2B 2fa617c58eb47463f8a61f9798b32c6da255d26b8e86c1558e427a715093f5a29ced3847ab6ecfe88ce1017664f36ac3e9fa9bbf72ede7e0fd3812b5f41fe933 SHA512 95153dc1f404aa64898a700c94c0deea3ca842c3152167d0987edabcf4a8eba16b6c8e6bc38a6775a849dc621e6a21434baf53d1669b1865fa5049cffa4387ac
 DIST scipy-ref-1.8.1.pdf 35025868 BLAKE2B 9221755d2dc69b8623271f75ff3078a0a4410fe9ff69ee317b40bf145af7da21a7f5f4b6b67820d8bb2878f83b7014f1ea7c2f0e026afb716da0479d394505e2 SHA512 8f27dcb9dd1030e15266389af21a1475ecfec5ea777fb2dbcf8db8d3398ac6e45c7040b8d6dbaffd29be3920925427be7c55efdc8094d670c857edfdab7f7728
diff --git a/dev-python/scipy/scipy-1.9.3.ebuild b/dev-python/scipy/scipy-1.9.3.ebuild
new file mode 100644
index 000000000000..a3764e438be5
--- /dev/null
+++ b/dev-python/scipy/scipy-1.9.3.ebuild
@@ -0,0 +1,107 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=meson-python
+PYTHON_COMPAT=( python3_{8..11} )
+PYTHON_REQ_USE="threads(+)"
+
+inherit fortran-2 distutils-r1 multiprocessing
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="
+	https://scipy.org/
+	https://github.com/scipy/scipy/
+	https://pypi.org/project/scipy/
+"
+
+if [[ ${PV} == *9999* ]] ; then
+	inherit git-r3
+
+	# Need submodules, so git for now.
+	EGIT_REPO_URI="https://github.com/scipy/scipy"
+	EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
+	EGIT_SUBMODULES=( '*' )
+else
+	# Upstream is often behind with doc updates
+	DOC_PV=1.8.1
+	MY_PV=${PV/_rc/rc}
+	MY_P=${PN}-${MY_PV}
+
+	SRC_URI="
+		mirror://pypi/${PN:0:1}/${PN}/${MY_P}.tar.gz
+		doc? (
+			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
+			https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${DOC_PV}.pdf
+		)"
+	S="${WORKDIR}"/${MY_P}
+
+	if [[ ${PV} != *rc* ]] ; then
+		KEYWORDS="~amd64 ~arm ~arm64 -hppa ~ppc ~ppc64 ~riscv ~s390 ~x86"
+	fi
+fi
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc +pythran"
+
+# umfpack is technically optional but it's preferred to have it available.
+DEPEND="
+	>=dev-python/numpy-1.18.5[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack:=
+	sci-libs/umfpack
+	virtual/cblas
+	>=virtual/lapack-3.8
+"
+RDEPEND="
+	${DEPEND}
+	dev-python/pillow[${PYTHON_USEDEP}]
+"
+BDEPEND="
+	dev-lang/swig
+	>=dev-python/cython-0.29.18[${PYTHON_USEDEP}]
+	dev-python/pybind11[${PYTHON_USEDEP}]
+	>=dev-util/meson-0.62.2
+	dev-util/patchelf
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	pythran? ( dev-python/pythran[${PYTHON_USEDEP}] )
+	test? ( dev-python/pytest-xdist[${PYTHON_USEDEP}] )"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.9.9999-meson-options-lapack.patch
+)
+
+EPYTEST_DESELECT=(
+	linalg/tests/test_decomp.py::TestSchur::test_sort
+	linalg/tests/test_solvers.py::test_solve_discrete_are
+)
+
+distutils_enable_tests pytest
+
+src_unpack() {
+	default
+
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+src_configure() {
+	export SCIPY_USE_PYTHRAN=$(usex pythran 1 0)
+}
+
+python_test() {
+	cd "${T}" || die
+
+	epytest -n "$(makeopts_jobs)" --pyargs scipy
+}
+
+python_install_all() {
+	use doc && \
+		local DOCS=( "${DISTDIR}"/${PN}-ref-${DOC_PV}.pdf ) \
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+
+	distutils-r1_python_install_all
+}