diff options
| author |   David Seifert <soap@gentoo.org> | 2019-12-11 00:48:34 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2019-12-11 00:48:34 +0100 |
| commit | 97912518709b1fc7b9bcfca3921bbdaf1ba9cdbf (patch) | |
| tree | 28acaecf435f029698c558b7bb3a8ab5640ec709 /sci-biology | |
| parent | sci-biology/velvet: Port to EAPI 7 (diff) | |
| download | gentoo-97912518709b1fc7b9bcfca3921bbdaf1ba9cdbf.tar.gz gentoo-97912518709b1fc7b9bcfca3921bbdaf1ba9cdbf.tar.bz2 gentoo-97912518709b1fc7b9bcfca3921bbdaf1ba9cdbf.zip | |
sci-biology/shrimp: Remove old
Package-Manager: Portage-2.3.81, Repoman-2.3.20
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/shrimp/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-2.0.1.ebuild | 54 |
2 files changed, 0 insertions, 55 deletions
diff --git a/sci-biology/shrimp/Manifest b/sci-biology/shrimp/Manifest index 775fee6a3bb7..5be68cd79e21 100644 --- a/sci-biology/shrimp/Manifest +++ b/sci-biology/shrimp/Manifest @@ -1,2 +1 @@ -DIST SHRiMP_2_0_1.src.tar.gz 158535 BLAKE2B 85b5462e812bece6a9ad51044bfeb823082e41ee66f313e0f7f621a29bfe5384d640278fa90ac102f476bef1538b0c7e1965dae7c1b877426b0d16f147a1e6ac SHA512 1cb5d46d59102502acb26c33f1d5537644268704145f6e2ae7428aeaba6681cf1e63f7924d8ee696431675f2c4627da46fd0171f25bbb3296d247339c2d709eb DIST SHRiMP_2_2_3.src.tar.gz 4596867 BLAKE2B 64e485b8e2524062c11c581bbcac426800c9f42f61da467378dbfd3add63f721a9da9c04df61bde3704e654a20395e799e89fc5e47129b1d3f5bc93f960470fa SHA512 029179aeeb317194b998c29aa91d1d2ce5ccbc6f9ad4a1043d1e5fc75d3344c2f39500ab07e8389c09fa179f0c9b59afee22691bc4eb5d396777f4e0fe25f2d5 diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild deleted file mode 100644 index c71aa047c1a7..000000000000 --- a/sci-biology/shrimp/shrimp-2.0.1.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit flag-o-matic toolchain-funcs - -MY_PV=${PV//./_} - -DESCRIPTION="SHort Read Mapping Package" -HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" -SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" - -LICENSE="shrimp" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="custom-cflags" - -# file collision on /usr/bin/utils #453044 -DEPEND=" - !sci-biology/emboss - !sci-mathematics/cado-nfs" -RDEPEND="${DEPEND}" - -S=${WORKDIR}/SHRiMP_${MY_PV} - -pkg_setup() { - if [[ ${CC} == *gcc* ]] && ! tc-has-openmp; then - elog "Please set CC to an OPENMP capable compiler (e.g. gcc[openmp] or icc" - die "C compiler lacks OPENMP support" - fi -} - -src_prepare() { - sed -e '1 a #include <stdint.h>' -i common/dag_glue.cpp || die - # respect LDFLAGS wrt 331823 - sed -i -e "s/LDFLAGS/LIBS/" -e "s/\$(LD)/& \$(LDFLAGS)/" \ - -e 's/-static//' Makefile || die -} - -src_compile() { - append-flags -fopenmp - use custom-cflags || append-flags -O3 # per instructions in BUILDING - tc-export CXX - emake CXXFLAGS="${CXXFLAGS}" LDFLAGS="${LDFLAGS}" -} - -src_install() { - rm bin/README - dobin bin/* - insinto /usr/share/${PN} - doins -r utils - dodoc HISTORY README TODO SPLITTING_AND_MERGING -} |