proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

6 files changed, 309 insertions, 0 deletions

diff --git a/sci-mathematics/polymake/Manifest b/sci-mathematics/polymake/Manifest
new file mode 100644
index 000000000000..b4b030adde48
--- /dev/null
+++ b/sci-mathematics/polymake/Manifest
@@ -0,0 +1,3 @@
+DIST polymake-2.13-1.tar.bz2 16539798 SHA256 d010edc206b22356333493e90bd24f807c7341730232276d47dbf1b62eb53aba SHA512 90fd0c7eacbb673734e08860a753f75dae06347ce8affcb5d50c55a51975b85260db841393979c0143be5a71a26b6737f9513509d75a5950b40654c54d0be3ea WHIRLPOOL cef5c95930c7633acb0652e6ce3cd6c85b469af912ad1adb695e58a018e4cedbdac9f63caaeb12f3da0a8f7fb2b71e853b782f308a1594cfc89d2c9697e6c170
+DIST polymake-2.14-minimal.tar.bz2 1996581 SHA256 c43b525c6f329ae2d8eb6d0e2af63f7846c4e5d408627665a28d0f421bbbcf9b SHA512 8989a8d2eb42c03e46569eca24334083154ff5107d7cd7d9dc481790b1553acd38025bd48ca016407e5c08b4b08f8062e19a1d4828ef535f83292510bdf5cd07 WHIRLPOOL 3f1521c60eafcff60b8ab2a443ff051835ee1c667eefcd59b33227e7a84293ccaefad4bc05eea4b8c541dea513b85b4e8538b6b572d762f2e1167b733029ec54
+DIST polymake-2.14.tar.bz2 38747874 SHA256 c181277b5cd45ac00f5667647e4eb5fa13c20547623fd6e63ce2522c058883c2 SHA512 f66eac2e821060719a16a6979fa0cc20edf9598d425ba2fff5bddfc053fd582b05a5579e1c2521fd382733a4808955aa49cb946234a183aba3ef75eed8c02b22 WHIRLPOOL 26b21d28d6b9a76b7a3164b6d5e45a00ed8a604b3f973a22db1472dce714dec5f8ad5d2ee7133321e2cd0f48d6380343b8e6d93db9e79b6726ef1e9954c04405
diff --git a/sci-mathematics/polymake/files/polymake_gcc49.patch b/sci-mathematics/polymake/files/polymake_gcc49.patch
new file mode 100644
index 000000000000..bc2cac5c5c58
--- /dev/null
+++ b/sci-mathematics/polymake/files/polymake_gcc49.patch
@@ -0,0 +1,68 @@
+commit 9fdecb57cb728170d0b87637c67947acf0cd27a4
+Author: Benjamin Lorenz <lorenz@math.tu-berlin.de>
+Date:   Sat May 17 23:05:41 2014 +0200
+
+    fix ppl configure.pl test for gcc 4.9
+
+diff --git a/bundled/ppl/configure.pl b/bundled/ppl/configure.pl
+index 128af1f..a147ea1 100644
+--- a/bundled/ppl/configure.pl
++++ b/bundled/ppl/configure.pl
+@@ -43,6 +43,7 @@ sub proceed {
+ 
+    } else {
+       my $error=Polymake::Configure::build_test_program(<<"---", Libs => "-lppl -lgmp");
++#include <cstddef>
+ #include "ppl.hh"
+ #include <iostream>
+ int main() {
+
+commit 6651dd4b284085ffb7385d6cbca1785b6242003b
+Author: Benjamin Lorenz <lorenz@math.tu-berlin.de>
+Date:   Wed May 7 15:53:12 2014 +0200
+
+    another gcc 4.9 cstddef header fix
+
+diff --git a/bundled/bliss/apps/graph/src/GraphIso.cc b/bundled/bliss/apps/graph/src/GraphIso.cc
+index 4000dd5..14e0e8f 100644
+--- a/bundled/bliss/apps/graph/src/GraphIso.cc
++++ b/bundled/bliss/apps/graph/src/GraphIso.cc
+@@ -15,6 +15,7 @@
+ */
+ 
+ #include <cstring>
++#include <cstddef> // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html
+ #include <bliss/graph.hh>
+ #include "polymake/graph/GraphIso.h"
+ 
+
+commit 716639b858f476d6a2fd8fe51da67d6cb347ec7c
+Author: Benjamin Lorenz <lorenz@math.tu-berlin.de>
+Date:   Tue May 6 14:58:33 2014 +0200
+
+    cstddef include fix for gcc 4.9 (see http://gcc.gnu.org/gcc-4.9/porting_to.html)
+
+diff --git a/bundled/libnormaliz/apps/polytope/src/normaliz.cc b/bundled/libnormaliz/apps/polytope/src/normaliz.cc
+index e6f2208..81e9783 100644
+--- a/bundled/libnormaliz/apps/polytope/src/normaliz.cc
++++ b/bundled/libnormaliz/apps/polytope/src/normaliz.cc
+@@ -14,6 +14,7 @@
+ --------------------------------------------------------------------------------
+ */
+ 
++#include <cstddef> // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html
+ #include <gmpxx.h>
+ 
+ #include "polymake/client.h"
+diff --git a/bundled/ppl/apps/polytope/include/ppl_interface_impl.h b/bundled/ppl/apps/polytope/include/ppl_interface_impl.h
+index fda2f39..1040c9e 100644
+--- a/bundled/ppl/apps/polytope/include/ppl_interface_impl.h
++++ b/bundled/ppl/apps/polytope/include/ppl_interface_impl.h
+@@ -17,6 +17,7 @@
+ #ifndef POLYMAKE_POLYTOPE_PPL_INTERFACE_IMPL_H
+ #define POLYMAKE_POLYTOPE_PPL_INTERFACE_IMPL_H
+ 
++#include <cstddef> // needed for gcc 4.9, see http://gcc.gnu.org/gcc-4.9/porting_to.html
+ #include <gmpxx.h> //for mpz/mpq-handling
+ #include "polymake/polytope/ppl_interface.h"
+ #include "polymake/common/lattice_tools.h"
diff --git a/sci-mathematics/polymake/metadata.xml b/sci-mathematics/polymake/metadata.xml
new file mode 100644
index 000000000000..2e7b4a5deb47
--- /dev/null
+++ b/sci-mathematics/polymake/metadata.xml
@@ -0,0 +1,25 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<maintainer>
+<email>tomka@gentoo.org</email>
+<name>Thomas Kahle</name>
+</maintainer>
+<herd>sci-mathematics</herd>
+<use>
+  <flag name="cdd">Enable sci-libs/cddlib interface for convex hull
+  computations (Should be kept enabled).</flag>
+  <flag name="lrs">Enable sci-libs/lrslib interface for convex hull computations.</flag>
+  <flag name="ppl">Enable dev-libs/ppl interface for convex hull computations.</flag>
+  <flag name="bliss">Enable sci-libs/bliss interface for graph and face lattice isomorphism computations.</flag>
+  <flag name="group">Build extension for dealing with permutation groups and symmetric objects.</flag>
+  <flag name="libnormaliz">Build the bundled extension for lattice related computations.</flag>
+  <flag name="singular">Enable the interface to sci-mathematics/singular for ideal related computations.</flag>
+  <flag name="libpolymake">Build the polymake library to build applications using the C++ interface.</flag>
+</use>
+<longdescription lang="en">
+Polymake started out as a tool for the algorithmic treatment of convex
+polyhedra. By now it also deals with finite simplicial complexes,
+tight spans of finite metric spaces, and other objects. 
+</longdescription>
+</pkgmetadata>
diff --git a/sci-mathematics/polymake/polymake-2.13.ebuild b/sci-mathematics/polymake/polymake-2.13.ebuild
new file mode 100644
index 000000000000..26e172f13b05
--- /dev/null
+++ b/sci-mathematics/polymake/polymake-2.13.ebuild
@@ -0,0 +1,64 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils flag-o-matic
+
+MY_PV=${PV}-1
+
+DESCRIPTION="research tool for polyhedral geometry and combinatorics"
+SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${PN}-${MY_PV}.tar.bz2"
+HOMEPAGE="http://polymake.org"
+
+IUSE="libpolymake"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="dev-libs/gmp
+	dev-libs/boost
+	dev-libs/libxml2:2
+	dev-perl/XML-LibXML
+	dev-libs/libxslt
+	dev-perl/XML-LibXSLT
+	dev-perl/XML-Writer
+	dev-perl/Term-ReadLine-Gnu"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/${PN}-${MY_PV}"
+
+src_prepare() {
+	# Don't strip
+	sed -i '/system "strip $to"/d' support/install.pl || die
+	epatch "${FILESDIR}/${PN}_gcc49.patch"
+
+	einfo "During compile this package uses up to"
+	einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if"
+	einfo "you run into trouble."
+}
+
+src_configure () {
+	export CXXOPT=$(get-flag -O)
+	# Configure does not accept --host, therefore econf cannot be used
+	./configure --prefix="${EPREFIX}/usr" \
+		--without-java \
+		$(use_with libpolymake callable) \
+		--without-prereq \
+		--libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \
+		"${myconf}" || die
+}
+
+src_install(){
+	emake -j1 DESTDIR="${D}" install
+	dosym libpolymake.so "${EPREFIX}/usr/$(get_libdir)/libpolymake.so.0"
+}
+
+pkg_postinst(){
+	elog "Docs can be found on http://www.polymake.org/doku.php/documentation"
+	elog " "
+	elog "Support for jreality is missing, sorry (see bug #346073)."
+}
diff --git a/sci-mathematics/polymake/polymake-2.14-r1.ebuild b/sci-mathematics/polymake/polymake-2.14-r1.ebuild
new file mode 100644
index 000000000000..d85b9c857663
--- /dev/null
+++ b/sci-mathematics/polymake/polymake-2.14-r1.ebuild
@@ -0,0 +1,90 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils flag-o-matic
+
+DESCRIPTION="research tool for polyhedral geometry and combinatorics"
+SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${P}-minimal.tar.bz2"
+HOMEPAGE="http://polymake.org"
+
+IUSE="+cdd lrs ppl bliss group +libnormaliz singular libpolymake"
+
+REQUIRED_USE="group? ( cdd lrs )"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+# do not allow new perl versions because our testbuilds segfault
+DEPEND="<dev-lang/perl-5.21
+	dev-libs/gmp
+	dev-libs/mpfr
+	dev-libs/libxml2:2
+	dev-libs/libxslt
+	ppl? ( dev-libs/ppl )
+	cdd? ( sci-libs/cddlib )
+	lrs? ( >=sci-libs/lrslib-051[gmp] )
+	bliss? ( sci-libs/bliss[gmp] )
+	group? ( dev-libs/boost )
+	libnormaliz? ( dev-libs/boost )
+	singular? ( >=sci-mathematics/singular-4.0.1 )"
+RDEPEND="${DEPEND}
+	dev-perl/XML-LibXML
+	dev-perl/XML-LibXSLT
+	dev-perl/XML-Writer
+	dev-perl/Term-ReadLine-Gnu"
+
+src_prepare() {
+	einfo "During compile this package uses up to"
+	einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if"
+	einfo "you run into trouble."
+}
+
+src_configure () {
+	export CXXOPT=$(get-flag -O)
+
+	# We need to define BLISS_USE_GMP if bliss was built with gmp support.
+	# Therefore we require gmp support on bliss, so that the package
+	# manager can prevent rebuilds with changed gmp flag.
+	if use bliss ; then
+		append-cxxflags -DBLISS_USE_GMP
+	fi
+
+	# Configure does not accept --host, therefore econf cannot be used
+
+	# Some of the options do not support using just '--with-option'
+	local myconf=""
+	use !group && myconf="$myconf --without-group"
+	use !libnormaliz && myconf="$myconf --without-libnormaliz"
+	use !libpolymake && myconf="$myconf --without-callable"
+
+	# And many other --with-arguments expect a path: --with-option=/path
+	./configure --prefix="${EPREFIX}/usr" \
+		--libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \
+		--without-prereq \
+		--without-java \
+		$(use_with cdd cdd "${EPREFIX}/usr") \
+		$(use_with lrs lrs "${EPREFIX}/usr") \
+		$(use_with ppl ppl "${EPREFIX}/usr") \
+		$(use_with bliss bliss "${EPREFIX}/usr") \
+		$(use_with singular singular "${EPREFIX}/usr") \
+		${myconf} || die
+}
+
+src_install(){
+	emake -j1 DESTDIR="${D}" install
+}
+
+pkg_postinst(){
+	elog "Docs can be found on http://www.polymake.org/doku.php/documentation"
+	elog " "
+	elog "Support for jreality is missing, sorry (see bug #346073)."
+	elog " "
+	elog "Additional features for polymake are available through external"
+	elog "software such as sci-mathmatics/4ti2 and sci-mathematics/topcom."
+	elog "After installing new external software run 'polymake --reconfigure'."
+}
diff --git a/sci-mathematics/polymake/polymake-2.14.ebuild b/sci-mathematics/polymake/polymake-2.14.ebuild
new file mode 100644
index 000000000000..1e9a96a9749b
--- /dev/null
+++ b/sci-mathematics/polymake/polymake-2.14.ebuild
@@ -0,0 +1,59 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit eutils flag-o-matic
+
+DESCRIPTION="research tool for polyhedral geometry and combinatorics"
+SRC_URI="http://polymake.org/lib/exe/fetch.php/download/${P}.tar.bz2"
+HOMEPAGE="http://polymake.org"
+
+IUSE="libpolymake"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="dev-libs/gmp
+	dev-libs/boost
+	dev-libs/libxml2:2
+	dev-perl/XML-LibXML
+	dev-libs/libxslt
+	dev-perl/XML-LibXSLT
+	dev-perl/XML-Writer
+	dev-perl/Term-ReadLine-Gnu"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	# Don't strip
+	sed -i '/system "strip $to"/d' support/install.pl || die
+
+	einfo "During compile this package uses up to"
+	einfo "750MB of RAM per process. Use MAKEOPTS=\"-j1\" if"
+	einfo "you run into trouble."
+}
+
+src_configure () {
+	export CXXOPT=$(get-flag -O)
+	# Configure does not accept --host, therefore econf cannot be used
+	./configure --prefix="${EPREFIX}/usr" \
+		--without-java \
+		$(use_with libpolymake callable) \
+		--without-prereq \
+		--libdir="${EPREFIX}/usr/$(get_libdir)" \
+		--libexecdir="${EPREFIX}/usr/$(get_libdir)/polymake" \
+		"${myconf}" || die
+}
+
+src_install(){
+	emake -j1 DESTDIR="${D}" install
+	dosym libpolymake.so "${EPREFIX}/usr/$(get_libdir)/libpolymake.so.0"
+}
+
+pkg_postinst(){
+	elog "Docs can be found on http://www.polymake.org/doku.php/documentation"
+	elog " "
+	elog "Support for jreality is missing, sorry (see bug #346073)."
+}