1 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/amos/amos-3.1.0-r2.ebuild b/sci-biology/amos/amos-3.1.0-r2.ebuild
new file mode 100644
index 000000000000..91c1f69f9756
--- /dev/null
+++ b/sci-biology/amos/amos-3.1.0-r2.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit flag-o-matic python-r1
+
+DESCRIPTION="A Modular, Open-Source whole genome assembler"
+HOMEPAGE="http://amos.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+	https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="qt4"
+
+DEPEND="qt4? ( dev-qt/qtcore:4 )"
+RDEPEND="${DEPEND}
+	dev-perl/DBI
+	dev-perl/Statistics-Descriptive
+	sci-biology/mummer"
+
+PATCHES=(
+	"${FILESDIR}"/${P}-gcc-4.7.patch
+	"${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch
+	"${WORKDIR}"/${P}-fix-c++14.patch
+	"${FILESDIR}"/${P}-qa-Wformat.patch
+)
+
+src_configure() {
+	# prevent GCC 6 log pollution due to hash_map deprecation in C++11
+	append-cxxflags -Wno-cpp
+
+	default
+}
+
+src_compile() {
+	emake -j1
+}
+
+src_install() {
+	default
+	python_replicate_script "${ED%/}/usr/bin/goBambus2"
+}