diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:08:32 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-03-13 16:08:32 +0000 |
| commit | 9b339ec5ad1fdc4ab872c6c6fce7335a6967e3c5 (patch) | |
| tree | 5f8bf16f7eb81e820be49326b53504258a8065c3 /sci-biology | |
| parent | sci-biology/seqan: New addition (diff) | |
| download | historical-9b339ec5ad1fdc4ab872c6c6fce7335a6967e3c5.tar.gz historical-9b339ec5ad1fdc4ab872c6c6fce7335a6967e3c5.tar.bz2 historical-9b339ec5ad1fdc4ab872c6c6fce7335a6967e3c5.zip | |
sci-biology/seqan: New addition
Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64
Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/seqan/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/seqan/metadata.xml | 5 | ||||
| -rw-r--r-- | sci-biology/seqan/seqan-1.3.1.ebuild | 39 |
3 files changed, 56 insertions, 2 deletions
diff --git a/sci-biology/seqan/Manifest b/sci-biology/seqan/Manifest index 5c742791e2f8..ea30766ee91d 100644 --- a/sci-biology/seqan/Manifest +++ b/sci-biology/seqan/Manifest @@ -1,4 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA256 + DIST seqan-1.3.1.zip 8787521 SHA256 87eebe73ace9ada2f4664a768ae212d4acc5fb3ce87702709c3d15bf2d153aeb SHA512 dafacccb4647fd0fc5a055d33390cb85f1c00ca74132e9b3839a739916acf9a2990db7db4f09e34f899b283cad8ccf6553a60cc7693164f250f08260c8ce8ae4 WHIRLPOOL 5a0a80d09e80285a4fc9fb9fb71adbea6b0b324a6a219cd7c9ef3d30e88133f5b25b3cf792b2b89e4ed07ff612f4aa347dc6f94e06974f947fe980c2e0a5d26b -EBUILD seqan-1.3.1.ebuild 806 SHA256 e255db934386cbf1396599845eda0447a77b48d04f542c5fd521ce81d23b00f5 SHA512 d818081ca432446b580d5ac12424b475db8106885f1a6291b7dd9043057c2d8c7de474814f78bce8c3103575f854b1378a1ec0758589ac0f7cd03301be5876ba WHIRLPOOL 3776130f7b636ca7b5730a9d8f85a95c00600fad5fc1e98e4013038e19b852170449a4355663fe24b2bb5d334811131a83a31105646acb85949b4d3e670d0dd6 -MISC ChangeLog 247 SHA256 aece55c48db915259218eef40bb9fef812d183ca97508ef810caa74346e545ab SHA512 80ae4a84860c6f31499dcfc9e75120f7646d7256f117e3ad2a83457890d50c50cf8a2a9279d26860b879db90642cb617b551c8771593043f427f8fdfcc445786 WHIRLPOOL 5758ddc3d55ee2871662132cad3b17700b75167465460e83541ac91917df3288ed6e188989169ce67215890da4c6880b641abc919463fce966693aff1bbb552d +EBUILD seqan-1.3.1.ebuild 902 SHA256 450d7ee10ab31b8660fb95310190cf0d2d85a820c0123c84e24de0bff4be93af SHA512 1bb190fd09957b174030c457161edb7800496d6591c69065b5cc23965e118f7386180f40d9269807c2a331044773d23125163b5e9c965fee0bfd067cdb990484 WHIRLPOOL 258eb686ee38d2702dd40a7d8fc889cddb25a5e2a3a8971030dbae26472271794eaffc8f9c642234952550799d93166f755dc72b8fa144c1e9d7c2d13046d210 +MISC ChangeLog 334 SHA256 c4ffdb54cdd909d930e1fe1506c39b98185820d15374d7a695d3b1ff1681fb48 SHA512 dfb73214209a0a9488e175fead1041c0497a4df26a1fee1cd4f70e5f7408bed7eb32b2223088aa6ea83bf9cd11eb23a52eae0e4361eafe51d8a9c98158204bb6 WHIRLPOOL 84c7438623b0846f862adc7fd4dd7b5811efbc96c1fec28064ef0771377519a012e61fc9cdd69660d8211f50d7794a337032a0a9992d8bc13a50b5a5f9728f04 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.19 (GNU/Linux) + +iEYEAREIAAYFAlFApIAACgkQgAnW8HDreRaubQCgmy7J9qDSPQiZlBUTyIITh1CQ +TwAAniMmcFR/mpEH2SdjjjnHEAsv9hoZ +=SeSL +-----END PGP SIGNATURE----- diff --git a/sci-biology/seqan/metadata.xml b/sci-biology/seqan/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-biology/seqan/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/seqan/seqan-1.3.1.ebuild b/sci-biology/seqan/seqan-1.3.1.ebuild new file mode 100644 index 000000000000..5416535d39da --- /dev/null +++ b/sci-biology/seqan/seqan-1.3.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-1.3.1.ebuild,v 1.1 2013/03/13 16:08:31 jlec Exp $ + +EAPI=5 + +PYTHON_COMPAT=( python{2_6,2_7} ) + +inherit cmake-utils flag-o-matic python-single-r1 + +DESCRIPTION="C++ Sequence Analysis Library" +HOMEPAGE="http://www.seqan.de/" +SRC_URI="http://ftp.seqan.de/releases/${P}.zip" + +SLOT="0" +LICENSE="BSD GPL-3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND}" + +S="${WORKDIR}"/${P}/cmake + +src_prepare() { + append-cppflags -I"${EPREFIX}/usr/include/bam" + rm -rf "${S}"/../lib/samtools || die + + sed \ + -e "s:docs:docs/.:g" \ + -e "/DESTINATION/s:seqan:docs/${PF}/html:g" \ + -i CMakeLists.txt || die + + sed \ + -e "/DESTINATION/s:bin):share/${PN}):g" \ + -i apps/CMakeLists.txt || die + + cmake-utils_src_prepare +} |